Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0783
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine r...    27   8.9  

>U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical
           protein F14B8.5a protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 374 HCNFGVSNGIL*CAYSFMRVLPCACSTQQY 285
           +CNF  SN    C +SF+ V+ CA  + QY
Sbjct: 172 NCNFVPSNHQNQCQFSFVLVISCADQSIQY 201


>U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical
           protein F14B8.5b protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 374 HCNFGVSNGIL*CAYSFMRVLPCACSTQQY 285
           +CNF  SN    C +SF+ V+ CA  + QY
Sbjct: 136 NCNFVPSNHQNQCQFSFVLVISCADQSIQY 165


>AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine
           receptor, class u protein28 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 100 AEGSLTCVVLCVICKYFIYLFIYIYACIHSIVLNFY 207
           AE SLT   + +IC Y     I I A ++SI  ++Y
Sbjct: 252 AEVSLTVTTVSMICSYLSNSMIVIAAQLNSIEYSYY 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,363,417
Number of Sequences: 27780
Number of extensions: 217620
Number of successful extensions: 688
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)