Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0783
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.64 
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    24   1.5  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   3.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.5  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   7.8  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   7.8  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   7.8  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    21   7.8  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    21   7.8  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    21   7.8  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    21   7.8  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    21   7.8  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    21   7.8  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    21   7.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 570 FICLLLYILRFEISNIIIFMYKMRNARAH 656
           F C++  +    +S I+I  Y  RNA  H
Sbjct: 298 FNCIMFMVASSVVSTILILNYHHRNADTH 326


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = -3

Query: 293 QQY*IYNVSSQIQYRRDKRAREREKSDKR*KLRTIECMHAYIYINK*IKYLHITHNTTHV 114
           ++Y  Y  +S+ +  RD+R RER K  K     +  C ++  Y N    Y  + +N  ++
Sbjct: 276 REYRKYRETSK-ERSRDRRERERSKEPKIISSLSNSCNYSNNYYNN-NNYKKLYYNINYI 333


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 293 QQY*IYNVSSQIQYRRDKRAREREKSDK 210
           ++Y  Y  +S+ ++R D+R RER K  K
Sbjct: 287 REYRKYRETSKERFR-DRRERERSKESK 313


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 521 DVLVFLTCVCVRCTTAFYMFIIIYF 595
           D  VF+TC+ +       +FII+++
Sbjct: 216 DTKVFVTCIFIWAYVIPLIFIILFY 240


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 521 DVLVFLTCVCVRCTTAFYMFIIIYF 595
           D  VF+TC+ +       +FII+++
Sbjct: 216 DTKVFVTCIFIWAYVIPLIFIILFY 240


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 248 RDKRAREREKSDK 210
           RDKR RER K  K
Sbjct: 68  RDKRERERSKERK 80


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 248 RDKRAREREKSDK 210
           RDKR RER K  K
Sbjct: 68  RDKRERERSKERK 80


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 293 QQY*IYNVSSQIQYRRDKRAREREKSDK 210
           ++Y  Y  +S+ +  RD+R RER K  K
Sbjct: 54  REYRKYRETSK-ERSRDRRERERSKEPK 80


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 293 QQY*IYNVSSQIQYRRDKRAREREKSDK 210
           ++Y  Y  +S+ +  RD+R RER K  K
Sbjct: 54  REYRKYRETSK-ERSRDRRERERSKEPK 80


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 293 QQY*IYNVSSQIQYRRDKRAREREKSDK 210
           ++Y  Y  +S+ +  RD+R RER K  K
Sbjct: 54  REYRKYRETSK-ERSRDRRERERSKEPK 80


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 293 QQY*IYNVSSQIQYRRDKRAREREKSDK 210
           ++Y  Y  +S+ +  RD+R RER K  K
Sbjct: 54  REYRKYRETSK-ERSRDRRERERSKEPK 80


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 293 QQY*IYNVSSQIQYRRDKRAREREKSDK 210
           ++Y  Y  +S+ +  RD+R RER K  K
Sbjct: 54  REYRKYRETSK-ERSRDRRERERSKEPK 80


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 293 QQY*IYNVSSQIQYRRDKRAREREKSDK 210
           ++Y  Y  +S+ +  RD+R RER K  K
Sbjct: 54  REYRKYRETSK-ERSRDRRERERSKEPK 80


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 293 QQY*IYNVSSQIQYRRDKRAREREKSDK 210
           ++Y  Y  +S+ +  RD+R RER K  K
Sbjct: 54  REYRKYRETSK-ERSRDRRERERSKEPK 80


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 293 QQY*IYNVSSQIQYRRDKRAREREKSDK 210
           ++Y  Y  +S+ +  RD+R RER K  K
Sbjct: 54  REYRKYRETSK-ERSRDRRERERSKEPK 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,040
Number of Sequences: 438
Number of extensions: 3077
Number of successful extensions: 48
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)