Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0781
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,973...    29   2.3  
01_06_1143 - 34862005-34862370,34862494-34862628,34862742-348629...    27   9.1  

>01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,
            9739708-9739831,9739927-9740635,9741826-9742132,
            9742213-9743704
          Length = 1108

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 312  IIIVNFNYGAIYVLKPFWFVIYSPF*REIFTQIWCTSVALYNI 440
            +I+ NF   A +VL  FW+V+Y+ F   + T I   S  LY +
Sbjct: 934  MILYNFYKNATFVLVLFWYVLYTAF--TLTTAITEWSSLLYTV 974


>01_06_1143 -
           34862005-34862370,34862494-34862628,34862742-34862992,
           34863192-34863243,34863408-34863694,34864030-34864182,
           34865393-34865889,34866173-34866241,34867006-34867074,
           34867486-34867560,34869341-34869412,34869499-34869570,
           34869664-34869807,34870321-34870416,34870736-34870807,
           34871081-34871152,34871683-34871830,34872609-34872708
          Length = 909

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 364 GLLFTLRFSGKFSLRYGVPVLHSTT*VPYYRKQIVLPSNYGSL*GKRI 507
           G + TLR  G FS++Y   +L  +T     R+ IV+   +G+L G ++
Sbjct: 123 GNIHTLRLIGTFSIKYPNQLLIDSTIREMCRQLIVVAYFHGTLNGNQL 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,578,733
Number of Sequences: 37544
Number of extensions: 317166
Number of successful extensions: 544
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)