Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0780
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...   160   2e-40
SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces pom...    26   6.2  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    26   6.2  

>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score =  160 bits (389), Expect = 2e-40
 Identities = 82/198 (41%), Positives = 126/198 (63%)
 Frame = +1

Query: 118 LFGKSQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTSDAEPQTDI 297
           LF K  KS  ++VR L D +  LE  + K +K+ E+VSK L  ++  L GT++ EP  D+
Sbjct: 4   LFNKRPKSTQDVVRCLCDNLPKLEINNDK-KKSFEEVSKCLQNLRVSLCGTAEVEPDADL 62

Query: 298 IVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEYICTKPE 477
            V+ L+ ++Y             +++FE KKD   +F+ +LRR + +R PTV+Y+   P+
Sbjct: 63  -VSDLSFQIYQSNLPFLLVRYLPKLEFESKKDTGLIFSALLRRHVASRYPTVDYMLAHPQ 121

Query: 478 ILFTLMSGYEHQEIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAF 657
           I   L+S Y +QE+A   G++LREC+R+EAL +++L S DF+ FF  ++ S+FD+ASDAF
Sbjct: 122 IFPVLVSYYRYQEVAFTAGSILRECSRHEALNEVLLNSRDFWTFFSLIQASSFDMASDAF 181

Query: 658 STFKELLTRHKILCAEFL 711
           STFK +L  HK   AEF+
Sbjct: 182 STFKSILLNHKSQVAEFI 199


>SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 205 AEKAQEDVSKNLVLIKNMLYGTSDAEPQTDIIVAQLAQ 318
           A +AQED +K L L+   +YGT   + +T++   +L +
Sbjct: 185 AAEAQEDETKPLPLVHFRVYGTKLLKTKTNLPRVELEE 222


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 517 IASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTF 666
           +A NC  +L +  RY   A I +  D   +   + +   F I  D  ST+
Sbjct: 123 VAKNCSVVLEDQKRYRIRASINM--DSIIDITVHQDAPPFKIGEDGNSTY 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,926
Number of Sequences: 5004
Number of extensions: 55405
Number of successful extensions: 147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)