Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0780
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1064 + 23700662-23700787,23701709-23701870,23701983-237021... 157 8e-39
07_03_1492 + 26960876-26960986,26961910-26962074,26962153-269622... 143 1e-34
03_01_0512 - 3849275-3849333,3849429-3849531,3849610-3849654,384... 126 2e-29
03_03_0021 + 13808274-13808384,13809036-13809200,13809249-138092... 71 9e-13
04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189 29 4.9
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 28 6.5
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 28 8.6
>07_03_1064 +
23700662-23700787,23701709-23701870,23701983-23702101,
23703128-23703202,23704387-23704480,23704856-23704915,
23705083-23705151,23705457-23705555,23706201-23706245,
23706339-23706441,23706665-23706723
Length = 336
Score = 157 bits (381), Expect = 8e-39
Identities = 81/207 (39%), Positives = 127/207 (61%), Gaps = 6/207 (2%)
Frame = +1
Query: 118 LFGKSQKSPAELVRSLKDAVTALER------GDKKAEKAQEDVSKNLVLIKNMLYGTSDA 279
LF ++PA++VR ++ + L+ GD K E+ ++SKN+ +K++LYG ++
Sbjct: 4 LFKSKPRTPADVVRQTRELLIFLDLHSGSRGGDAKREEKMAELSKNIRELKSILYGNGES 63
Query: 280 EPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEY 459
EP T+ V QL QE + +++ E +KD QV N+ R+Q+ ++ EY
Sbjct: 64 EPVTEACV-QLTQEFFRENTLRLLIICLPKLNLETRKDATQVVANLQRQQVSSKIVASEY 122
Query: 460 ICTKPEILFTLMSGYEHQEIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFD 639
+ ++L TL+SGYE+ +IA + G+MLREC R++++A+ +L SD FF Y+++ FD
Sbjct: 123 LEANKDLLDTLISGYENMDIALHYGSMLRECIRHQSIARYVLESDHMKKFFDYIQLPNFD 182
Query: 640 IASDAFSTFKELLTRHKILCAEFLEAN 720
IASDA +TFKELLTRHK AEFL N
Sbjct: 183 IASDASATFKELLTRHKATVAEFLSKN 209
>07_03_1492 +
26960876-26960986,26961910-26962074,26962153-26962271,
26962559-26962633,26963063-26963156,26963239-26963298,
26963474-26963539,26963622-26963720,26964027-26964035
Length = 265
Score = 143 bits (347), Expect = 1e-34
Identities = 77/194 (39%), Positives = 120/194 (61%)
Frame = +1
Query: 130 SQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTSDAEPQTDIIVAQ 309
++ SP ELVRS+K+++ AL+ + KA EDV KN+ ++ L G + EP + ++ Q
Sbjct: 12 ARPSPQELVRSIKESLLALDT--RTGAKALEDVEKNVSTLRQTLSGDGEVEPNQEQVL-Q 68
Query: 310 LAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEYICTKPEILFT 489
+A E+ + +EG+KD+A ++ +LR+++ V+YI ++L
Sbjct: 69 IALEICKEDVLSLFVQNMPSLGWEGRKDLAHCWSILLRQKVDEAYCCVQYIENHFDLLDF 128
Query: 490 LMSGYEHQEIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFK 669
L+ Y++ E+A NCG MLREC +Y LAK +L S F FF+YVE+S FDIASDA +TFK
Sbjct: 129 LVVCYKNLEVALNCGNMLRECIKYPTLAKYILESSSFELFFQYVELSNFDIASDALNTFK 188
Query: 670 ELLTRHKILCAEFL 711
+LLT+H+ +EFL
Sbjct: 189 DLLTKHEAAVSEFL 202
>03_01_0512 -
3849275-3849333,3849429-3849531,3849610-3849654,
3849876-3849974,3850078-3850146,3850251-3850310,
3850540-3850633,3850875-3850949,3851101-3851219,
3851433-3851600,3852743-3852928
Length = 358
Score = 126 bits (303), Expect = 2e-29
Identities = 74/211 (35%), Positives = 115/211 (54%), Gaps = 10/211 (4%)
Frame = +1
Query: 118 LFGKSQKSPAELVRSLKDAVTALER-----GDK---KAEKAQEDVSKNLVLIKNMLYGTS 273
LF + P E+VR ++ + L GDK K E D++K++ +K++LYG
Sbjct: 22 LFRSKARGPVEVVRHARELLAFLAENHDACGDKRDVKREHKMVDLAKSIGEMKSILYGNG 81
Query: 274 DAEPQTDIIVAQLAQEMYXXXXXXXXXXXXXR--IDFEGKKDVAQVFNNVLRRQIGTRSP 447
+A+P D +QL +E + +D E +KDV QV N+LR+++ R
Sbjct: 82 EADP-VDEACSQLTKEFFKENTNSLHLLVVCLPYMDLETQKDVTQVTANLLRQKVDYRMV 140
Query: 448 TVEYICTKPEILFTLMSGYEHQEIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEV 627
+Y+ ++L LMSGY++ +IA + +LR+C R++ A+ +L S FF Y++
Sbjct: 141 ASDYLEENQDLLDVLMSGYDNMDIAIHYSAILRDCIRHQVAARYVLESQHMKKFFDYIQY 200
Query: 628 STFDIASDAFSTFKELLTRHKILCAEFLEAN 720
F+IASDAF TFKELLTRH+ AEF N
Sbjct: 201 PDFNIASDAFKTFKELLTRHRSSAAEFFSNN 231
>03_03_0021 +
13808274-13808384,13809036-13809200,13809249-13809278,
13809279-13809397,13809696-13809770,13812071-13812146,
13813224-13813289,13813364-13813462,13814072-13814174,
13814338-13814411
Length = 305
Score = 70.9 bits (166), Expect = 9e-13
Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 9/158 (5%)
Frame = +1
Query: 139 SPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTSDAEPQTDIIVA---Q 309
+P E+VRS+KD+ AL K +A E+V KNL ++ ML G +AEP + ++ +
Sbjct: 15 TPEEVVRSIKDSFQALHT--KNGARALEEVEKNLSSLRQMLSGDGEAEPNQEQVLQITLE 72
Query: 310 LAQE------MYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEYICTK 471
+ +E + + + +KD+ + +LR++ V+YI
Sbjct: 73 ICKEDVLSLFVQNLPSLGWGPVEIVSSELQVRKDLVHCWCILLRQKFDESYCCVKYIENH 132
Query: 472 PEILFTLMSGYEHQEIASNCGTMLRECARYEALAKIML 585
E+L L+ Y++ ++A NCG MLREC +Y L K+ +
Sbjct: 133 LELLDFLVGCYKNLDVALNCGNMLRECIKYPTLTKVRI 170
>04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189
Length = 470
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 124 GKSQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIK 252
G+ +K EL+R + + +E K+ EKAQE++ K +++
Sbjct: 224 GRVEKICTELIRGIGEDKAEVEALKKETEKAQEELQKEREMLQ 266
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 156 NKLRRAFLRLTKERHSIKATWAGDISNYVYIRLYFWINYC 37
NKLR A LTK+ ++ ++ VY+R W+N C
Sbjct: 289 NKLRHANEDLTKQVEGLQMNRFSEVEELVYLR---WVNAC 325
>02_04_0481 +
23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 103 LNTMPLFGKSQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNML 261
L + FG+ K+ AE ++S+K A+ + KKA+ E V L K L
Sbjct: 300 LQKVNTFGEENKNLAEELQSVKAALDVVNAEAKKAKAEFEQVEHKLSTTKEKL 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,901,446
Number of Sequences: 37544
Number of extensions: 314291
Number of successful extensions: 835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -