Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0780
(720 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53337-4|AAA96186.2| 636|Caenorhabditis elegans Hypothetical pr... 224 6e-59
U53337-5|AAP40522.1| 377|Caenorhabditis elegans Hypothetical pr... 223 1e-58
Z99277-3|CAB16486.1| 338|Caenorhabditis elegans Hypothetical pr... 220 9e-58
AF386744-1|AAL57289.1| 384|Caenorhabditis elegans PAF-1 protein. 29 2.5
AF039716-8|AAB96738.1| 384|Caenorhabditis elegans Paf-acetylhyd... 29 2.5
AF025464-3|AAB71016.3| 949|Caenorhabditis elegans Transporter o... 29 2.5
>U53337-4|AAA96186.2| 636|Caenorhabditis elegans Hypothetical
protein R02E12.2a protein.
Length = 636
Score = 224 bits (547), Expect = 6e-59
Identities = 116/223 (52%), Positives = 152/223 (68%), Gaps = 16/223 (7%)
Frame = +1
Query: 100 RLNTMPL-FGKSQKSPAELVRSLKDAVTALER-------------GDKKAEKAQEDVSKN 237
R MPL FGKS KSPA++V++L++ +T L++ DKK +KA ++VSKN
Sbjct: 256 RRKVMPLLFGKSHKSPADVVKTLREVLTILDKLPPPKLDKDGNIQSDKKYDKALDEVSKN 315
Query: 238 LVLIKNMLYGTSDAEPQTDIIV--AQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFN 411
+ +IK+ +YG AEP ++ +V AQLAQE+Y + +FE KKDV Q+FN
Sbjct: 316 VAMIKSFIYGNDSAEPSSEHVVQVAQLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFN 375
Query: 412 NVLRRQIGTRSPTVEYICTKPEILFTLMSGYEHQEIASNCGTMLRECARYEALAKIMLYS 591
N+LRRQIGTRSPTVEY+ +PEIL L+ GY +IA CG MLRE R++ LAKI+LYS
Sbjct: 376 NLLRRQIGTRSPTVEYLGARPEILIQLVQGYSVPDIALTCGLMLRESIRHDHLAKIILYS 435
Query: 592 DDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFLEAN 720
D FY FF YV+ FDI+SDAFSTFKEL TRHK + AEFL++N
Sbjct: 436 DVFYTFFLYVQSEVFDISSDAFSTFKELTTRHKAIIAEFLDSN 478
>U53337-5|AAP40522.1| 377|Caenorhabditis elegans Hypothetical
protein R02E12.2b protein.
Length = 377
Score = 223 bits (544), Expect = 1e-58
Identities = 115/219 (52%), Positives = 151/219 (68%), Gaps = 16/219 (7%)
Frame = +1
Query: 112 MPL-FGKSQKSPAELVRSLKDAVTALER-------------GDKKAEKAQEDVSKNLVLI 249
MPL FGKS KSPA++V++L++ +T L++ DKK +KA ++VSKN+ +I
Sbjct: 1 MPLLFGKSHKSPADVVKTLREVLTILDKLPPPKLDKDGNIQSDKKYDKALDEVSKNVAMI 60
Query: 250 KNMLYGTSDAEPQTDIIV--AQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLR 423
K+ +YG AEP ++ +V AQLAQE+Y + +FE KKDV Q+FNN+LR
Sbjct: 61 KSFIYGNDSAEPSSEHVVQVAQLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFNNLLR 120
Query: 424 RQIGTRSPTVEYICTKPEILFTLMSGYEHQEIASNCGTMLRECARYEALAKIMLYSDDFY 603
RQIGTRSPTVEY+ +PEIL L+ GY +IA CG MLRE R++ LAKI+LYSD FY
Sbjct: 121 RQIGTRSPTVEYLGARPEILIQLVQGYSVPDIALTCGLMLRESIRHDHLAKIILYSDVFY 180
Query: 604 NFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFLEAN 720
FF YV+ FDI+SDAFSTFKEL TRHK + AEFL++N
Sbjct: 181 TFFLYVQSEVFDISSDAFSTFKELTTRHKAIIAEFLDSN 219
>Z99277-3|CAB16486.1| 338|Caenorhabditis elegans Hypothetical
protein Y53C12A.4 protein.
Length = 338
Score = 220 bits (537), Expect = 9e-58
Identities = 107/207 (51%), Positives = 146/207 (70%), Gaps = 5/207 (2%)
Frame = +1
Query: 115 PLFGKSQKSPAELVRSLKDAVTALER-----GDKKAEKAQEDVSKNLVLIKNMLYGTSDA 279
PLFGK+ K+PA++V++L+DA+ ++R ++K EKA E+ +K L L K +YG+
Sbjct: 4 PLFGKADKTPADVVKNLRDALLVIDRHGTNTSERKVEKAIEETAKMLALAKTFIYGSDAN 63
Query: 280 EPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEY 459
EP + V QLAQE+Y + +FE KKDVA VFNN+LRRQIGTRSPTVEY
Sbjct: 64 EPNNEQ-VTQLAQEVYNANVLPMLIKHLHKFEFECKKDVASVFNNLLRRQIGTRSPTVEY 122
Query: 460 ICTKPEILFTLMSGYEHQEIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFD 639
+ +PEIL TL+ GYE +IA CG+MLRE R+E LA+I+LYS+ F FF +V+ FD
Sbjct: 123 LAARPEILITLLLGYEQPDIALTCGSMLREAVRHEHLARIVLYSEYFQRFFVFVQSDVFD 182
Query: 640 IASDAFSTFKELLTRHKILCAEFLEAN 720
IA+DAFSTFK+L+T+HK +CAE+L+ N
Sbjct: 183 IATDAFSTFKDLMTKHKNMCAEYLDNN 209
>AF386744-1|AAL57289.1| 384|Caenorhabditis elegans PAF-1 protein.
Length = 384
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 391 DVAQVFNNVLRRQIGTRSPTVEYICTKPEILFTL 492
D VF N L +Q G PT Y+C + I TL
Sbjct: 317 DFPFVFPNWLAKQFGVHGPTEPYLCMQSAIELTL 350
>AF039716-8|AAB96738.1| 384|Caenorhabditis elegans
Paf-acetylhydrolase protein 1 protein.
Length = 384
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 391 DVAQVFNNVLRRQIGTRSPTVEYICTKPEILFTL 492
D VF N L +Q G PT Y+C + I TL
Sbjct: 317 DFPFVFPNWLAKQFGVHGPTEPYLCMQSAIELTL 350
>AF025464-3|AAB71016.3| 949|Caenorhabditis elegans Transporter of
sr proteins protein1 protein.
Length = 949
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 550 ILAASCHSWKLSLDVHTLTSV*IIFQAWYKCTLLLEIVFQFD 425
+L A H W L + + L + + F WY+ T E +F++D
Sbjct: 297 LLVAKHHDWALKIAIFLLQLIEMSFNVWYRIT---EELFKYD 335
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,407,823
Number of Sequences: 27780
Number of extensions: 305209
Number of successful extensions: 837
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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