Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0779
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    24   5.4  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    24   5.4  
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S...    24   7.1  

>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 213 RWAAPSSFTSLCRLPIRPTSATS 281
           RW +  S +S C  P  PTS+++
Sbjct: 111 RWRSSKSSSSQCSSPFLPTSSSN 133


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 257 HPSYVCYVTLPGGACFGSF 313
           HP Y  Y    GGA FG +
Sbjct: 445 HPDYNTYFCFAGGAGFGGY 463


>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = -2

Query: 322 AVLKTAKARSTGERDVADVGRM------GSRHRLVNDEGAAHRAPA 203
           A L+T K   T E  V +V +       GS H L+N+ GA   APA
Sbjct: 48  AGLQTLKLDVTDEDSVREVEQEVRKFTNGSLHYLINNAGAPCSAPA 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,027,802
Number of Sequences: 5004
Number of extensions: 13581
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)