Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0779
         (335 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1004 + 29621209-29621590,29622615-29622827,29622974-296233...    27   2.9  
02_02_0252 + 8323087-8323523,8323929-8324019,8324155-8324281,832...    27   2.9  
08_02_0881 - 22216657-22216780,22216918-22217056,22217120-222171...    27   5.0  
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733...    26   8.7  
06_03_0296 - 19266462-19266623                                         26   8.7  

>03_05_1004 +
           29621209-29621590,29622615-29622827,29622974-29623337,
           29623751-29624573
          Length = 593

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 308 CQSTLHRGA*RSRRRTDGQPAQTGK 234
           C+  ++RG  RSR+  +GQP    K
Sbjct: 240 CERHMNRGRHRSRKHVEGQPGHAAK 264


>02_02_0252 +
           8323087-8323523,8323929-8324019,8324155-8324281,
           8324469-8324623
          Length = 269

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 298 RSTGERDVADVGRMGSRHRLVNDEGAAHR 212
           ++TG  D+A    M ++H L+  EGAA R
Sbjct: 241 KATGGADIATAASMQAKHELLACEGAAMR 269


>08_02_0881 -
           22216657-22216780,22216918-22217056,22217120-22217192,
           22218260-22218357,22218516-22218542,22218625-22218715,
           22218819-22218900,22219983-22220098
          Length = 249

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 217 HRAPASCRLHLPKLLEGFHYVH 152
           H  P+  + ++ +LL+G HY H
Sbjct: 131 HSTPSQVKYYMEQLLKGLHYCH 152


>07_03_1632 + 28271559-28271645,28272641-28272713,28273030-28273361,
            28273455-28274791,28275451-28275848,28275963-28277644,
            28277727-28277884,28278645-28278802,28279110-28279270,
            28279826-28280014
          Length = 1524

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 177  SFGR*RRHEAGARWAAPSSFTSLCRLPIRPTSATSRSPVERALAVFKTAQLKR 335
            SFG+ + H    +    +S   +   P++ +   S S   R+ A   TAQLKR
Sbjct: 1200 SFGKEKSHPKSNKHDMQNSKAQMLPSPLKESKVESHSAPLRSNASKLTAQLKR 1252


>06_03_0296 - 19266462-19266623
          Length = 53

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 84  PQRDGSGYTMAAPLPHRSSRRVRPSCR 4
           P+RDGS +T+A    H +S R + + R
Sbjct: 22  PRRDGSSFTLALRPTHSTSSREKTTRR 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,172,351
Number of Sequences: 37544
Number of extensions: 126689
Number of successful extensions: 405
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)