Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0779
         (335 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035727-1|AAH35727.1|  337|Homo sapiens Lix1 homolog (mouse)-li...    91   1e-18
BC036467-1|AAH36467.1|  282|Homo sapiens Lix1 homolog (mouse) pr...    71   7e-13
AK098400-1|BAC05298.1|  282|Homo sapiens protein ( Homo sapiens ...    71   7e-13
BC104469-1|AAI04470.1|  289|Homo sapiens chromosome 19 open read...    29   4.7  
BC104468-1|AAI04469.1|  253|Homo sapiens C19orf19 protein protein.     29   4.7  
BC105003-1|AAI05004.1|  802|Homo sapiens neuronal PAS domain pro...    28   6.2  
BC105001-1|AAI05002.1|  802|Homo sapiens HLH-PAS transcription f...    28   6.2  
AK096253-1|BAC04738.1|  802|Homo sapiens protein ( Homo sapiens ...    28   6.2  
AB049469-1|BAC19830.1|  802|Homo sapiens HLH-PAS transcription f...    28   6.2  
BC017226-1|AAH17226.1|  237|Homo sapiens ring finger protein 166...    28   8.2  
BC013948-1|AAH13948.1|  237|Homo sapiens ring finger protein 166...    28   8.2  

>BC035727-1|AAH35727.1|  337|Homo sapiens Lix1 homolog (mouse)-like
           protein.
          Length = 337

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 40/61 (65%), Positives = 45/61 (73%)
 Frame = +2

Query: 152 VNVVEALQEFWQVKXXXXXXXXXXXLVIYQSVPAAHPSYVCYVTLPGGACFGSFQNCPTK 331
           VNVVEALQEFWQ+K           LV+Y+ VP+  P YVCYVTLPGG+CFGSFQ CPTK
Sbjct: 98  VNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQFCPTK 157

Query: 332 A 334
           A
Sbjct: 158 A 158


>BC036467-1|AAH36467.1|  282|Homo sapiens Lix1 homolog (mouse)
           protein.
          Length = 282

 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 31/65 (47%), Positives = 42/65 (64%)
 Frame = +2

Query: 140 VLSTVNVVEALQEFWQVKXXXXXXXXXXXLVIYQSVPAAHPSYVCYVTLPGGACFGSFQN 319
           V   +NVV  LQEFW+ K           +V+Y+S+PA  P +V YVTLPGG+CFG+FQ 
Sbjct: 24  VFKDLNVVSMLQEFWESKQQQKAAFPSEGVVVYESLPAPGPPFVSYVTLPGGSCFGNFQC 83

Query: 320 CPTKA 334
           C ++A
Sbjct: 84  CLSRA 88


>AK098400-1|BAC05298.1|  282|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25534 fis, clone CBR08513. ).
          Length = 282

 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 31/65 (47%), Positives = 42/65 (64%)
 Frame = +2

Query: 140 VLSTVNVVEALQEFWQVKXXXXXXXXXXXLVIYQSVPAAHPSYVCYVTLPGGACFGSFQN 319
           V   +NVV  LQEFW+ K           +V+Y+S+PA  P +V YVTLPGG+CFG+FQ 
Sbjct: 24  VFKDLNVVSMLQEFWESKQQQKAAFPSEGVVVYESLPAPGPPFVSYVTLPGGSCFGNFQC 83

Query: 320 CPTKA 334
           C ++A
Sbjct: 84  CLSRA 88


>BC104469-1|AAI04470.1|  289|Homo sapiens chromosome 19 open reading
           frame 19 protein.
          Length = 289

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 210 ARWAAPSSFTSLCRLPIRPTSATSRSP 290
           AR   P +FT  CRLP++P   ++ +P
Sbjct: 135 ARHRTPPAFTLGCRLPLKPLDTSAPAP 161


>BC104468-1|AAI04469.1|  253|Homo sapiens C19orf19 protein protein.
          Length = 253

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 210 ARWAAPSSFTSLCRLPIRPTSATSRSP 290
           AR   P +FT  CRLP++P   ++ +P
Sbjct: 99  ARHRTPPAFTLGCRLPLKPLDTSAPAP 125


>BC105003-1|AAI05004.1|  802|Homo sapiens neuronal PAS domain
           protein 4 protein.
          Length = 802

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +3

Query: 183 GR*RRHEAGARWAAPSSFTSLCRLPI----RPTSATSRSPVERALAVFKTAQLK 332
           GR   H  GA WA    FT+ C  P+    RP       P    LA+F++   K
Sbjct: 171 GRFHAHPPGAYWAGNPVFTAFC-APLEPRPRPGPGPGPGPASLFLAMFQSRHAK 223


>BC105001-1|AAI05002.1|  802|Homo sapiens HLH-PAS transcription
           factor NXF protein.
          Length = 802

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +3

Query: 183 GR*RRHEAGARWAAPSSFTSLCRLPI----RPTSATSRSPVERALAVFKTAQLK 332
           GR   H  GA WA    FT+ C  P+    RP       P    LA+F++   K
Sbjct: 171 GRFHAHPPGAYWAGNPVFTAFC-APLEPRPRPGPGPGPGPASLFLAMFQSRHAK 223


>AK096253-1|BAC04738.1|  802|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38934 fis, clone NT2NE2014221. ).
          Length = 802

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +3

Query: 183 GR*RRHEAGARWAAPSSFTSLCRLPI----RPTSATSRSPVERALAVFKTAQLK 332
           GR   H  GA WA    FT+ C  P+    RP       P    LA+F++   K
Sbjct: 171 GRFHAHPPGAYWAGNPVFTAFC-APLEPRPRPGPGPGPGPASLFLAMFQSRHAK 223


>AB049469-1|BAC19830.1|  802|Homo sapiens HLH-PAS transcription
           factor NXF protein.
          Length = 802

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +3

Query: 183 GR*RRHEAGARWAAPSSFTSLCRLPI----RPTSATSRSPVERALAVFKTAQLK 332
           GR   H  GA WA    FT+ C  P+    RP       P    LA+F++   K
Sbjct: 171 GRFHAHPPGAYWAGNPVFTAFC-APLEPRPRPGPGPGPGPASLFLAMFQSRHAK 223


>BC017226-1|AAH17226.1|  237|Homo sapiens ring finger protein 166
           protein.
          Length = 237

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 225 PSSFTSLCRLPIRPTSATSRSPVERALAVFK 317
           PS    LCRLP  P      + VE+ L+ +K
Sbjct: 65  PSPLCPLCRLPFDPKKVDKATHVEKQLSSYK 95


>BC013948-1|AAH13948.1|  237|Homo sapiens ring finger protein 166
           protein.
          Length = 237

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 225 PSSFTSLCRLPIRPTSATSRSPVERALAVFK 317
           PS    LCRLP  P      + VE+ L+ +K
Sbjct: 65  PSPLCPLCRLPFDPKKVDKATHVEKQLSSYK 95


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,544,372
Number of Sequences: 237096
Number of extensions: 612706
Number of successful extensions: 1575
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1575
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1794632842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)