Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0779
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z73422-4|CAA97770.1|  319|Caenorhabditis elegans Hypothetical pr...    26   7.7  
L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain pro...    26   7.7  

>Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical
           protein C36A4.8 protein.
          Length = 547

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 195 RHEAGARWAAPSSFTSLCRLPIRPTSATSRSPVERALAVFKTAQLKR 335
           R +  +R   PS+F      P+ P    ++ PVE    VF   +LK+
Sbjct: 140 RRKRPSRPQPPSAFAEEPAEPVEPPEPATKQPVELQSRVFPLEKLKK 186


>Z73422-4|CAA97770.1|  319|Caenorhabditis elegans Hypothetical
           protein B0564.10a protein.
          Length = 319

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 192 RRHEAGARWAAPSSFTSLCRLPIRPTSATSRSPVERALAVFKTAQ 326
           R ++    W     F ++   P+ PT+ATSR      LA   TAQ
Sbjct: 237 RNNQTTFNWQIKPQFQTI---PMSPTTATSRFSTAANLAPLPTAQ 278


>L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain
           protein protein.
          Length = 319

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 192 RRHEAGARWAAPSSFTSLCRLPIRPTSATSRSPVERALAVFKTAQ 326
           R ++    W     F ++   P+ PT+ATSR      LA   TAQ
Sbjct: 237 RNNQTTFNWQIKPQFQTI---PMSPTTATSRFSTAANLAPLPTAQ 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,057,610
Number of Sequences: 27780
Number of extensions: 85792
Number of successful extensions: 237
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)