Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0778
(615 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM292372-1|CAL23184.2| 771|Tribolium castaneum gustatory recept... 25 0.67
AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax pr... 23 2.0
AM292343-1|CAL23155.2| 301|Tribolium castaneum gustatory recept... 23 2.7
EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2 p... 21 6.2
AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax pr... 21 8.2
AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax pr... 21 8.2
AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax pr... 21 8.2
AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax pr... 21 8.2
AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax pr... 21 8.2
AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein. 21 8.2
AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduce... 21 8.2
>AM292372-1|CAL23184.2| 771|Tribolium castaneum gustatory receptor
candidate 51 protein.
Length = 771
Score = 24.6 bits (51), Expect = 0.67
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 123 RVMGLTAEVFTRLLGSGVLEVVF 191
R++G T E+F L G ++ V+F
Sbjct: 228 RILGDTVEIFNSLFGYQIILVIF 250
>AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 23.0 bits (47), Expect = 2.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 168 SPIGA*TPPPLAPSLFLTSPYRGPRRSNT*ASPSTE 61
SP+ T PP P+ TS S+T ++ STE
Sbjct: 145 SPLSVSTSPPGKPATSTTSQNLSSPASSTSSTSSTE 180
>AM292343-1|CAL23155.2| 301|Tribolium castaneum gustatory receptor
candidate 22 protein.
Length = 301
Score = 22.6 bits (46), Expect = 2.7
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -1
Query: 378 MVLYSVKKC--YYNSVFLLSKRASNSC 304
+VL K C Y +F LSKRAS+ C
Sbjct: 191 IVLDMGKNCVTYVFDLFYLSKRASDLC 217
>EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2
protein.
Length = 535
Score = 21.4 bits (43), Expect = 6.2
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 170 WGARSGIRRATRTQTIPFHTNMSKLLRYRELGT 268
W A G + T +P T +S LR+ L T
Sbjct: 244 WVASFGRPKMTPQSLLPSQTGLSPYLRFGCLST 276
>AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 21.0 bits (42), Expect = 8.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 168 SPIGA*TPPPLAPSLFLTSPYRGPRRSNT*ASPSTE 61
SP+ T PP P+ S S+T ++ STE
Sbjct: 145 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTE 180
>AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax
protein.
Length = 230
Score = 21.0 bits (42), Expect = 8.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 168 SPIGA*TPPPLAPSLFLTSPYRGPRRSNT*ASPSTE 61
SP+ T PP P+ S S+T ++ STE
Sbjct: 145 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTE 180
>AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 21.0 bits (42), Expect = 8.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 168 SPIGA*TPPPLAPSLFLTSPYRGPRRSNT*ASPSTE 61
SP+ T PP P+ S S+T ++ STE
Sbjct: 145 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTE 180
>AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax
protein.
Length = 297
Score = 21.0 bits (42), Expect = 8.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 168 SPIGA*TPPPLAPSLFLTSPYRGPRRSNT*ASPSTE 61
SP+ T PP P+ S S+T ++ STE
Sbjct: 145 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTE 180
>AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax
protein.
Length = 268
Score = 21.0 bits (42), Expect = 8.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 168 SPIGA*TPPPLAPSLFLTSPYRGPRRSNT*ASPSTE 61
SP+ T PP P+ S S+T ++ STE
Sbjct: 101 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTE 136
>AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein.
Length = 312
Score = 21.0 bits (42), Expect = 8.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 168 SPIGA*TPPPLAPSLFLTSPYRGPRRSNT*ASPSTE 61
SP+ T PP P+ S S+T ++ STE
Sbjct: 145 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTE 180
>AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduced
Scr protein.
Length = 312
Score = 21.0 bits (42), Expect = 8.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 168 SPIGA*TPPPLAPSLFLTSPYRGPRRSNT*ASPSTE 61
SP+ T PP P+ S S+T ++ STE
Sbjct: 145 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTE 180
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,250
Number of Sequences: 336
Number of extensions: 3348
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -