Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0778
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    28   1.2  
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    27   2.8  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   5.0  
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl...    25   8.7  

>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 279 VWGPKCGAHKNLRPFWKVKTPNYNNIFLRSI 371
           +WG  C AH   R  WK++     ++  RSI
Sbjct: 431 IWGSICLAHIQFRRAWKIQNRKLEDLPYRSI 461


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 108 MGWSKRVMGLTAEVFTRLLGSGVLEVVFG 194
           M W +++M  +AE+     G  VL V FG
Sbjct: 167 MSWERKIMHRSAEIIAPTKGRRVLNVGFG 195


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 306  KNLRPFWKVKTPNYNNIFLRSIRPFIIGNQI 398
            +NL   W +  P ++N F  SI PFI+  +I
Sbjct: 1027 RNLSMHWSIPFPTHHNFF--SIIPFILLTEI 1055


>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 470 SFGISVEQNLLLQA*YMPCKYLLITDL 550
           S G+S E+ +LLQ+ +MP K  L   +
Sbjct: 192 SVGLSNERTILLQSAFMPAKACLCASI 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,035
Number of Sequences: 5004
Number of extensions: 53257
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)