Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0778
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0541 + 4275660-4275766,4275856-4275973,4276160-4276386,427...    29   2.9  
01_01_1134 + 8994315-8995892                                           29   2.9  
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076...    28   5.1  
07_03_1139 + 24254662-24255306                                         28   6.8  

>11_01_0541 +
           4275660-4275766,4275856-4275973,4276160-4276386,
           4276505-4276729,4276902-4277052,4277139-4277345,
           4277442-4277520,4277605-4277723
          Length = 410

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 571 GHITLLSQISNQKVFTRHIL 512
           G +TLLSQ+ +Q V T+H+L
Sbjct: 176 GKVTLLSQLKSQGVITKHVL 195


>01_01_1134 + 8994315-8995892
          Length = 525

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 186 PLRAPHSPIGA*TPPPLAPSLFLTSPYRG 100
           P++   SP  +  PPPLA S+F  +P RG
Sbjct: 207 PVKMKISPGSSTFPPPLANSIFAAAPNRG 235


>12_02_0513 -
           19906147-19906271,19906470-19906791,19907091-19907695,
           19908569-19908617
          Length = 366

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 333 KTPNYNNIFLRSIRPFIIGNQIQYDIIVIND 425
           K+P   N F+R + P  +G  I +D++  ND
Sbjct: 185 KSPKAVNEFVRRVSPATVGRSIDWDLVRDND 215


>07_03_1139 + 24254662-24255306
          Length = 214

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 116 PAHTVGPEGQIPRLHPRQRDDIPSP 42
           PAH   P   +P L P  RD  PSP
Sbjct: 152 PAHRPDPATAVPHLPPLGRDPSPSP 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,427,578
Number of Sequences: 37544
Number of extensions: 357557
Number of successful extensions: 1059
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)