Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0778
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54503| Best HMM Match : DUF753 (HMM E-Value=4.7)                    31   0.74 
SB_54846| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_11746| Best HMM Match : RVT_1 (HMM E-Value=5e-31)                   29   2.3  
SB_22732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-23)                 28   5.2  
SB_58951| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_59383| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_40787| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_3085| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  
SB_38804| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_11195| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_10516| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_54503| Best HMM Match : DUF753 (HMM E-Value=4.7)
          Length = 141

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 142 RRC-LRAYWGVGCSKWYSEGDTYANDPIPYKYEQTFTLSRTRDV 270
           RRC   A   + C +  S G  +  D  PY++   F++SR RDV
Sbjct: 63  RRCKTTASAKLACLQVDSRGSPFPPDDRPYRFTSNFSVSRARDV 106


>SB_54846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 91  VKYLGFTLDRGMTFRPHVETV 29
           VKYLG  +D+ +TF+ H+E +
Sbjct: 93  VKYLGVLIDKNLTFKYHIEHI 113


>SB_11746| Best HMM Match : RVT_1 (HMM E-Value=5e-31)
          Length = 323

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 91  VKYLGFTLDRGMTFRPHVETV 29
           VKYLG  +D+ +TF+ H+E +
Sbjct: 257 VKYLGVLIDKNLTFKYHIEHI 277


>SB_22732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-23)
          Length = 457

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 130 ITLFDQPIPWAPKVKYLGFTLDRGMTFRPHVETVRDR 20
           +TL   PI      + LG   D  +T+ PHVE +  R
Sbjct: 407 VTLNSCPIEQVNSARVLGVVFDNHLTWEPHVEHLSKR 443


>SB_58951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 98 PEGQIPRLHPRQRDDIPSPRRNGTRSR 18
          P G   R HP QR + PSP     +SR
Sbjct: 15 PFGNTQRFHPYQRPEQPSPNNKTDQSR 41


>SB_59383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 130 ITLFDQPIPWAPKVKYLGFTLDRGMTFRPHVE 35
           +TL   PI      + LG   D  +T+ PHVE
Sbjct: 625 VTLNSCPIEQVNSARVLGVVFDNHLTWEPHVE 656


>SB_40787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 130 ITLFDQPIPWAPKVKYLGFTLDRGMTFRPHVE 35
           +TL   PI      + LG   D  +T+ PHVE
Sbjct: 66  VTLNSCPIEQVNSARVLGVVFDNHLTWEPHVE 97


>SB_3085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 130 ITLFDQPIPWAPKVKYLGFTLDRGMTFRPHVE 35
           +TL   PI      + LG   D  +T+ PHVE
Sbjct: 66  VTLNSCPIEQVNSARVLGVVFDNHLTWEPHVE 97


>SB_38804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 599 TRLFSKHFCRAHYTSFTNQ*SEGIYKAYTMPVIEDFAQQ-KSRKK 468
           TR+ S+HF    Y +  N   + + K  ++P I D++ Q KSR+K
Sbjct: 289 TRVCSRHFSEEDYLALDNA-GQRMLKRGSVPSIFDWSSQPKSRRK 332


>SB_11195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 596

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 130 ITLFDQPIPWAPKVKYLGFTLDRGMTFRPHVE 35
           +TL   PI      + LG   D  +T+ PHVE
Sbjct: 66  VTLNSCPIEQVNSARVLGVVFDNHLTWEPHVE 97


>SB_10516| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 130 ITLFDQPIPWAPKVKYLGFTLDRGMTFRPHVE 35
           +TL   PI      + LG   D  +T+ PHVE
Sbjct: 167 VTLNSCPIEQVNSARVLGVVFDNHLTWEPHVE 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,161,317
Number of Sequences: 59808
Number of extensions: 410615
Number of successful extensions: 1015
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)