Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0778
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z80217-8|CAB02294.1|  207|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like ...    27   8.1  
U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like ...    27   8.1  
AL110487-16|CAH10818.1|  304|Caenorhabditis elegans Hypothetical...    27   8.1  
AL110487-15|CAH10817.1|  307|Caenorhabditis elegans Hypothetical...    27   8.1  
AL110487-14|CAB54432.1|  395|Caenorhabditis elegans Hypothetical...    27   8.1  
AF097737-1|AAD16170.1|  982|Caenorhabditis elegans hunchback-rel...    27   8.1  

>AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical
           protein Y41G9A.6 protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 195 LRIPLRAPHSPIGA*TPPPLAPSLFLTSP 109
           + + +R P  P+GA   PP+ P LF  +P
Sbjct: 475 VNLQIRVPQQPLGAAGFPPVTPGLFENNP 503


>Z80217-8|CAB02294.1|  207|Caenorhabditis elegans Hypothetical
           protein F37B1.8 protein.
          Length = 207

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 348 NNIFLRSIRPFIIGNQIQY-DIIVINDI 428
           N +  RS   F+IGN I Y D++V+N++
Sbjct: 138 NGLLERSKSGFLIGNSITYADLVVVNNL 165


>U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform b protein.
          Length = 960

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = -3

Query: 160 RRVNTSAVSPITLFDQPIPWAPKVKYLGFTLDRGMTFRPHVE 35
           + + T  V P+T   QP P+ P +   G      M    H++
Sbjct: 657 QEIKTETVEPVTSIAQPFPFNPMMGNHGLNFANHMLLNKHLD 698


>U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform a protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = -3

Query: 160 RRVNTSAVSPITLFDQPIPWAPKVKYLGFTLDRGMTFRPHVE 35
           + + T  V P+T   QP P+ P +   G      M    H++
Sbjct: 679 QEIKTETVEPVTSIAQPFPFNPMMGNHGLNFANHMLLNKHLD 720


>AL110487-16|CAH10818.1|  304|Caenorhabditis elegans Hypothetical
           protein Y39E4B.3c protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 125 SDGANGGGVYAPIGEWGARSGIRRAT 202
           S G  GGG ++  G+ G+R+G+++ T
Sbjct: 33  SGGGGGGGGFSSRGQSGSRTGVQQGT 58


>AL110487-15|CAH10817.1|  307|Caenorhabditis elegans Hypothetical
           protein Y39E4B.3b protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 125 SDGANGGGVYAPIGEWGARSGIRRAT 202
           S G  GGG ++  G+ G+R+G+++ T
Sbjct: 33  SGGGGGGGGFSSRGQSGSRTGVQQGT 58


>AL110487-14|CAB54432.1|  395|Caenorhabditis elegans Hypothetical
           protein Y39E4B.3a protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 125 SDGANGGGVYAPIGEWGARSGIRRAT 202
           S G  GGG ++  G+ G+R+G+++ T
Sbjct: 33  SGGGGGGGGFSSRGQSGSRTGVQQGT 58


>AF097737-1|AAD16170.1|  982|Caenorhabditis elegans
           hunchback-related protein protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = -3

Query: 160 RRVNTSAVSPITLFDQPIPWAPKVKYLGFTLDRGMTFRPHVE 35
           + + T  V P+T   QP P+ P +   G      M    H++
Sbjct: 679 QEIKTETVEPVTSIAQPFPFNPMMGNHGLNFANHMLLNKHLD 720


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,165,460
Number of Sequences: 27780
Number of extensions: 302489
Number of successful extensions: 716
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)