Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0778
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   3.1  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    22   5.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.2  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 148 TSAVSPITLFDQPIPW 101
           T  +SP  L D  IPW
Sbjct: 74  TGEISPAMLLDNGIPW 89


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 101 PRYGLVKKSDGANGGG 148
           PR   VK+SDG   GG
Sbjct: 1   PRTRRVKRSDGRGNGG 16


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 516 ICLVNTF*LLICERSVMCPTKMF 584
           +C +NTF LL    +V C  + F
Sbjct: 563 VCYLNTFLLLATPTTVTCILQRF 585



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 378 MVLYSVKKCYYNSVFLLSKRASNSCV 301
           ++L  V  CY N+  LL+   + +C+
Sbjct: 556 ILLAGVLVCYLNTFLLLATPTTVTCI 581


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 516 ICLVNTF*LLICERSVMCPTKMF 584
           +C +NTF LL    +V C  + F
Sbjct: 653 VCYLNTFLLLATPTTVTCILQRF 675



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 378 MVLYSVKKCYYNSVFLLSKRASNSCV 301
           ++L  V  CY N+  LL+   + +C+
Sbjct: 646 ILLAGVLVCYLNTFLLLATPTTVTCI 671


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 170 WGARSGIRRATRTQTIPFHTNMSKLLRYRELGT 268
           W A  G  + T    +P  T +S  LR+  L T
Sbjct: 248 WVASFGRPKMTPQSLLPSQTGLSPYLRFGCLST 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,986
Number of Sequences: 438
Number of extensions: 3972
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)