Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0778
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03190.1 68418.m00267 expressed protein                             30   1.1  
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    30   1.1  
At5g24500.1 68418.m02887 expressed protein                             27   7.5  
At4g32290.1 68417.m04594 expressed protein contains Pfam profile...    27   7.5  
At3g12140.2 68416.m01511 emsy N terminus domain-containing prote...    27   7.5  
At3g12140.1 68416.m01510 emsy N terminus domain-containing prote...    27   7.5  
At5g23530.1 68418.m02761 expressed protein contains similarity t...    27   9.9  
At4g35820.1 68417.m05089 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   9.9  

>At5g03190.1 68418.m00267 expressed protein
          Length = 451

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 285 GPKCGAHKNLRPFW-KVKTPNYNNIFLRSIRPFIIG-NQIQYDIIVI 419
           GPK   HK ++PFW K++T  Y  + +  +   ++G   + YD  ++
Sbjct: 63  GPKLFFHKLVQPFWGKIETEKYPQVVIADLVDELMGLKLLHYDAKIL 109


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +2

Query: 95  RGPRYGLVKKSDGANGGGVYAPIGEWGARSGIRRATRTQTIPF 223
           RG  YG      G+  GG   P+G W ARSG      T+T PF
Sbjct: 68  RGQGYG----GRGSGYGGRGGPVGGWNARSGGWDRRDTETNPF 106


>At5g24500.1 68418.m02887 expressed protein
          Length = 334

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 504 NRRFCSTEIPKETVIEIVNKK 442
           N R CS E P++ V+ +VN+K
Sbjct: 120 NPRHCSLETPEDVVVPLVNQK 140


>At4g32290.1 68417.m04594 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 384

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 54  VIPLSRVKPRYLTFGAHGMGWSKRVMGLTAEVFTRLLGSGVLEVVFG 194
           V+ L + +PRY   G +G  WSK V  +   +F R      LE + G
Sbjct: 325 VLRLRKTRPRYGEDGINGSEWSK-VERMDPFLFARKFSPQALEPLLG 370


>At3g12140.2 68416.m01511 emsy N terminus domain-containing protein
           / ENT domain-containing protein contains Pfam profile
           PF03735: ENT domain
          Length = 327

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -2

Query: 101 GPEGQIPRLHPRQRDDIPSP-RRNGTRSRR 15
           G  G+ PR+H  +R+ +P P ++NG+  RR
Sbjct: 222 GGRGRGPRIHQPRRELVPPPTQQNGSGGRR 251


>At3g12140.1 68416.m01510 emsy N terminus domain-containing protein
           / ENT domain-containing protein contains Pfam profile
           PF03735: ENT domain
          Length = 327

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -2

Query: 101 GPEGQIPRLHPRQRDDIPSP-RRNGTRSRR 15
           G  G+ PR+H  +R+ +P P ++NG+  RR
Sbjct: 222 GGRGRGPRIHQPRRELVPPPTQQNGSGGRR 251


>At5g23530.1 68418.m02761 expressed protein contains similarity to
           PrMC3 [Pinus radiata] GI:5487873
          Length = 335

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 254 DSVKVCSYLYGMGSFAYVSPSEYHFEHPTPQ*ARK 150
           D + V  + +G G FA++SP+ Y +++   + ARK
Sbjct: 85  DKIPVVVFFHG-GGFAFLSPNAYPYDNVCRRFARK 118


>At4g35820.1 68417.m05089 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Mus musculus [SP|Q60715], Homo sapiens
           [GI:18073925]; contains PF03171 2OG-Fe(II) oxygenase
           superfamily domain
          Length = 272

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 489 STEIPKETVIEIVNKKPAAF*YH 421
           S   P E  +E++ K+P AF YH
Sbjct: 79  SLRFPNERWLEVITKEPRAFVYH 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,236,488
Number of Sequences: 28952
Number of extensions: 279432
Number of successful extensions: 766
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)