Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0777
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    28   0.91 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.2  
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    27   2.1  
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    27   2.1  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   2.8  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   3.7  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   4.8  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    25   6.4  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.4  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   6.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.4  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = +3

Query: 138 ISCDKYWKCDN----GVAELKTCGNGLAFDATDS--KYLTENCDYLHN 263
           + CD+ W C+N    G+  L  C NG+    +D   K L    D L N
Sbjct: 30  LKCDRVWPCENCKKRGIPNL--CPNGILVSVSDKLIKLLLSRIDTLQN 75


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 4/134 (2%)
 Frame = +1

Query: 205 SLSTPQIPNXXXXXXXXXXXLSAERGHSL----SPQSPLLTVRDCTASSLMKTSATFSGT 372
           SLST  IP+           LS+    S     S  S +++    ++SS   TS+T S +
Sbjct: 234 SLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSS 293

Query: 373 AGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTL 552
           + +   P  +++    ++ S +S    +   S+ +    +  ++ P   S T++ S+ + 
Sbjct: 294 SSSSSSPTSTSSTISSSSSSSSSFSSTL---SSSSMSSSSSFSSSPTSSSSTISSSSSSP 350

Query: 553 IPKIAVNITSVSRA 594
                 + TS S++
Sbjct: 351 SSSSFSSTTSSSKS 364


>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 289 LSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAP 411
           L+ Q+PL  + D  A+   +  +T  G+AGT +  A+  +P
Sbjct: 102 LTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 289 LSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAP 411
           L+ Q+PL  + D  A+   +  +T  G+AGT +  A+  +P
Sbjct: 102 LTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 280 GHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 444
           GH+ +  S   T    TA+S + +SAT S    T+   +   + D+ T   PAS+
Sbjct: 141 GHASASTSIPSTAITVTANSTIYSSATSSFPYSTDVSVSTGTSTDIVTLPPPASS 195


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 162 CDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVEC 272
           C N V  LK   NG    +  S+ L+E C Y  N  C
Sbjct: 374 CSNAVKNLKCSANGTPSGSKISQVLSELC-YYDNKAC 409


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 298  QSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 444
            Q+   T    T ++ ++T+   +GTAGTE   A +A    PTT +  +A
Sbjct: 1191 QATTATETQATTATEVQTTTGATGTAGTE-TQATTATEVQPTTGATGTA 1238



 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 298  QSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 444
            Q+   T    T ++ ++T+   +GTAGTE   A +A    PTT +  +A
Sbjct: 1273 QATTATETQATTATEVQTTTGATGTAGTE-TQATTATEVQPTTGATGTA 1320


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +1

Query: 379 TEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPT-LARSAVTLI 555
           T  P   S   +LPT +   S       +S   +  QT    +PP  SPT +  ++ ++ 
Sbjct: 135 TTFPSTTSITENLPTIDPTRSTRSSSHIQSLSPESKQTSDGHRPP--SPTSITTTSTSID 192

Query: 556 PKIAVNITS 582
           P +A +  S
Sbjct: 193 PSVAFSSKS 201


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 490 TDSAAQPPVRSPTLARSAV 546
           ++SAA PPV SP L RS +
Sbjct: 479 SNSAASPPVSSPGLRRSHI 497


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 336 FPDENKCDVFWNCW 377
           F D N  D +WNCW
Sbjct: 350 FADRNFYDDWWNCW 363


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/64 (25%), Positives = 26/64 (40%)
 Frame = +1

Query: 265 LSAERGHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 444
           +S     S+ PQS        +ASS   T +T S          +S +  +P+T S   +
Sbjct: 468 VSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPS 527

Query: 445 CGLI 456
             +I
Sbjct: 528 SSII 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,591
Number of Sequences: 5004
Number of extensions: 49285
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)