Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0777
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    27   0.11 
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   1.7  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   3.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.0  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.0  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 434 GLSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQS 321
           GL   G SGAALIA       +PE   +V I  D +++
Sbjct: 301 GLLCGGSSGAALIAALKIAKDIPEEKRMVIILPDGIRN 338


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 327 YGIFPDENKCDVFWNC 374
           YG FP++ K   ++NC
Sbjct: 59  YGEFPEDEKLKCYFNC 74


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
 Frame = +3

Query: 132 HHISCDKYWKCDNGV-----AELKTCGNGL-AFDATDSKYLTE 242
           H  SCD+ W  D G        ++ C   L  FD T  K L +
Sbjct: 134 HADSCDRLWVLDTGTIGIGNTTIQACPYTLNIFDLTSDKLLRQ 176


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
 Frame = -1

Query: 443 ADAGLSVVGKSGAALIAGGFSVPAV----PENVA 354
           + AG+ VVG + A+++AG  S+  V    PE++A
Sbjct: 9   SSAGVGVVGGTIASVVAGAASLTLVKAETPEHLA 42


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = +3

Query: 147 DKYWKCDNGVAELKTCGNG 203
           + YW+C++   +++  G G
Sbjct: 63  ENYWQCNDKKTDIEETGRG 81


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 141 SCDKYWKCDNGVAEL 185
           +CD+ W  D GV ++
Sbjct: 119 ACDRLWGVDTGVDDI 133


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 240 ENCDYLHNVECGE 278
           E CDY  N+  GE
Sbjct: 40  EECDYYQNLNLGE 52


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 292  SPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPD 414
            SP SP+L+VR    +  +  +ATF     T     +   PD
Sbjct: 1484 SPSSPVLSVRTQGQAPGIPPAATFLSPNSTTLVLRLHVWPD 1524


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 292  SPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPD 414
            SP SP+L+VR    +  +  +ATF     T     +   PD
Sbjct: 1480 SPSSPVLSVRTQGQAPGIPPAATFLSPNSTTLVLRLHVWPD 1520


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,043
Number of Sequences: 438
Number of extensions: 3772
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)