Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0777
(599 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP... 29 1.8
At4g14510.1 68417.m02236 expressed protein contains Pfam domain,... 29 2.4
At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ b... 29 3.1
At5g04040.1 68418.m00384 patatin-related contains Patatin domain... 28 4.1
At1g11660.1 68414.m01339 heat shock protein, putative strong sim... 28 4.1
At5g01500.1 68418.m00064 mitochondrial substrate carrier family ... 28 5.4
At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP... 28 5.4
At1g55430.1 68414.m06340 DC1 domain-containing protein contains ... 28 5.4
At5g62260.1 68418.m07817 AT hook motif-containing protein contai... 27 9.5
At4g31840.1 68417.m04524 plastocyanin-like domain-containing pro... 27 9.5
At4g01930.1 68417.m00257 DC1 domain-containing protein contains ... 27 9.5
At3g47050.1 68416.m05109 glycosyl hydrolase family 3 protein bet... 27 9.5
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 27 9.5
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 27 9.5
At1g72390.1 68414.m08373 expressed protein 27 9.5
>At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP1
isozyme 3 (TOPP3) / phosphoprotein phosphatase 1
identical to SP|P48483 Serine/threonine protein
phosphatase PP1 isozyme 3 (EC 3.1.3.16) {Arabidopsis
thaliana}, phosphoprotein phosphatase 1 GB:AAA32838
GI:166799 from [Arabidopsis thaliana]
Length = 322
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 318 SRLYGIFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWADQVPECKN-EEVANG 494
+R+YG + DE K W + C P A E +CM PE K+ +E+ N
Sbjct: 128 NRIYGFY-DECKKRYSVRVWKIFTDCFNCLPVAALIDEKILCMHGGLSPELKHLDEIRN- 185
Query: 495 FGCPAPGEVSNAG 533
P P ++ + G
Sbjct: 186 --IPRPADIPDHG 196
>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 932
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -3
Query: 351 CFHQGRCRTVSNSEEWRLGAQAVSSLRTQRCEGSRSSRSSIWNLWRR--KRDRCRRFSVR 178
C G ++S +R G + +++ CEGS SS SS W R K+++ R V
Sbjct: 31 CKFHGTSSSIS-LRSYRFGFSFMKNVKRLSCEGSSSSSSSRNENWNRTQKQNQFRPSKVV 89
Query: 177 LHR 169
L+R
Sbjct: 90 LNR 92
>At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ
boundaries domain protein 11 (LBD11) identical to
SP|Q9SK08 LOB domain protein 11 {Arabidopsis thaliana}
Length = 229
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = +1
Query: 328 TASSLMKTSATF------SGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSA 471
TAS++ K + T S T+ PP+ P P SP +AC ++R R A
Sbjct: 11 TASAVAKVTETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCA 64
>At5g04040.1 68418.m00384 patatin-related contains Patatin domain
PF01734
Length = 825
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 11 LVPGLSSQYVFEVFISVSGRPR--RSCGPRVLQMPRRLRFLPSPHLL 145
++ L+S F+ ++GR C PR + PR L +L SPH++
Sbjct: 324 MLRNLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVV 370
>At1g11660.1 68414.m01339 heat shock protein, putative strong
similarity to gb|Z70314 heat-shock protein from
Arabidopsis thaliana and is a member of the PF|00012
Hsp70 protein family
Length = 773
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -1
Query: 443 ADAGLSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQSRTVRSGDWGLKLCPLSALN 264
AD+GLS+ L+ G +PA+ + ++ +F RE RTV + + + C L
Sbjct: 324 ADSGLSLDQIHSVELVGSGSRIPAISKMLSSLFKRE---LGRTVNASECVARGCALQCAM 380
Query: 263 VVKVVAV 243
+ V V
Sbjct: 381 LSPVFRV 387
>At5g01500.1 68418.m00064 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 415
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = -1
Query: 431 LSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQSRTVRSGDWGLKLCPLSALNVVKV 252
LS+V K A AG F+ A A + + +Q+ VR+G K A+ ++
Sbjct: 109 LSIVPKDAALFFAGAFAGAAAKSVTAPLDRIKLLMQTHGVRAGQQSAK----KAIGFIEA 164
Query: 251 VAVLGQVFGICG 216
+ ++G+ GI G
Sbjct: 165 ITLIGKEEGIKG 176
>At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP1
isozyme 5 (TOPP5) / phosphoprotein phosphatase 1
identical to SP|P48485 Serine/threonine protein
phosphatase PP1 isozyme 5 (EC 3.1.3.16) {Arabidopsis
thaliana}, phosphoprotein phosphatase 1 GI:166803
{Arabidopsis thaliana}
Length = 312
Score = 27.9 bits (59), Expect = 5.4
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 318 SRLYGIFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWADQVPECKN-EEVANG 494
+R+YG + DE K W + C P A E +CM PE N E++ N
Sbjct: 137 NRIYGFY-DECKRRFNVKLWKVFTDTFNCLPVAAVIDEKILCMHGGLSPELINVEQIKN- 194
Query: 495 FGCPAPGEVSNAG 533
P +V +AG
Sbjct: 195 --IERPTDVPDAG 205
>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 657
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
Frame = +3
Query: 156 WKCDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVECGERTQLEPPISTPH-CSRLYG 332
W CD CG L D D Y C + + C ++ PH S
Sbjct: 234 WPCD-------VCGFLLNKDTDDLVYACLPCSLMVHRSCIYLPRVIKITRHPHRLSLTSS 286
Query: 333 IFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWAD 455
+ P + C + + + +Y C G Y S+ W D
Sbjct: 287 LQPGDFSCGLCRHTVDVNCGQYSCDKGCQYAIHSKCATWRD 327
>At5g62260.1 68418.m07817 AT hook motif-containing protein contains
Pfam PF03479: Domain of unknown function (DUF296);
contains Pfam PF02178: AT hook motif; similar to AT-Hook
DNA-Binding Protein SAP1 protein (GI:4165183)
[Antirrhinum majus]; similar to AT-hook protein 2,
Arabidopsis thaliana, EMBL:ATAJ4119
Length = 441
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 388 PPAISAAPDLPTTESPASACGL-----IRFRSAKTKK*QTDSAAQPPVRSPTLARSAVT 549
PPA S+AP +PTT +P SA + + + +K D + P PTL+ + ++
Sbjct: 49 PPAPSSAP-VPTTVTPGSATASTGSDPTKKKRGRPRKYAPDGSLNPRFLRPTLSPTPIS 106
>At4g31840.1 68417.m04524 plastocyanin-like domain-containing
protein
Length = 177
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 452 SPHADAGLSVVGKSGAALIAGGFSV 378
SP G +V SGAA +AGGFSV
Sbjct: 140 SPSEFDGPAVAPTSGAAKLAGGFSV 164
>At4g01930.1 68417.m00257 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +3
Query: 210 FDATDSKYLTENCDYLHNVECGERTQ--LEPPISTPHCSRL 326
F+A Y + CD+ + CG+R+ +E P H +L
Sbjct: 31 FEAISDGYYCKTCDFFVHKSCGDRSSEYIEHPSHPSHALQL 71
>At3g47050.1 68416.m05109 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
TREMBL:AB017502_1
Length = 612
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 206 ETVAAGFQFGYTVVALPVFVTGDVVRVETEVVGAFEG 96
ET+A+G++F Y +VA+ + + +E+V F G
Sbjct: 472 ETLASGYRFSYAIVAVGESPYAETMGDNSELVIPFNG 508
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +1
Query: 355 ATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSP 525
A +G A T PP + AP PTT PA+ + T + A PP P
Sbjct: 16 AGVTGQAPTS-PPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPP 71
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +1
Query: 355 ATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSP 525
A +G A T PP + AP PTT PA+ + T + A PP P
Sbjct: 16 AGVTGQAPTS-PPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPP 71
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 27.1 bits (57), Expect = 9.5
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
Frame = +1
Query: 289 LSPQSPLLTVRDCTASSLMKTSATFS-GTAGTEKPPAISAAPDLPTTESPA----SACGL 453
+S QSP L+ S L S FS G+ GT +A D T PA + G
Sbjct: 302 ISAQSPRLSAGGPPQSPLSSKSGEFSGGSMGTHYGAVAAAQKDKAVTSIPAIGATQSVGS 361
Query: 454 IRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSV 585
+ + ++ Q AA+ S + T+ ++VN SV
Sbjct: 362 SANEAMQQRQHQAQMAAKRRTNSLPKTQVISTVGSPVSVNTISV 405
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,466,349
Number of Sequences: 28952
Number of extensions: 286829
Number of successful extensions: 869
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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