Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0776
         (685 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8H931 Cluster: Putative UDP-glucose 4-epimerase; n=5; ...    35   2.1  
UniRef50_UPI0000ECD46A Cluster: Tetratricopeptide repeat protein...    33   4.9  
UniRef50_Q8CNT0 Cluster: Abortive phage resistance protein; n=1;...    33   4.9  
UniRef50_Q03FC8 Cluster: Integrase; n=1; Pediococcus pentosaceus...    33   6.5  
UniRef50_Q22SU0 Cluster: Putative uncharacterized protein; n=1; ...    33   6.5  
UniRef50_O74562 Cluster: Exocyst complex component sec8; n=1; Sc...    33   6.5  

>UniRef50_Q8H931 Cluster: Putative UDP-glucose 4-epimerase; n=5;
           Oryza sativa|Rep: Putative UDP-glucose 4-epimerase -
           Oryza sativa subsp. japonica (Rice)
          Length = 408

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +1

Query: 337 GYITKKSVCVRSDARLEFTGYKKLNETIREIVLYYDNTIH 456
           G + K     R DA + F G K + E++++ +LYYDN+++
Sbjct: 77  GALEKVFASTRFDAVVHFAGLKAVGESVQKPLLYYDNSVN 116


>UniRef50_UPI0000ECD46A Cluster: Tetratricopeptide repeat protein 3
           (TPR repeat protein 3) (TPR repeat protein D) (RING
           finger protein 105).; n=2; Gallus gallus|Rep:
           Tetratricopeptide repeat protein 3 (TPR repeat protein
           3) (TPR repeat protein D) (RING finger protein 105). -
           Gallus gallus
          Length = 1876

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -2

Query: 675 NYGDQNRTSMSHEMRYAPDC-ACHTKCVIAGDAGLLRR---QSATKPR 544
           NY D+N      E+ + PDC    +K VI   +GL++R   Q  TKP+
Sbjct: 641 NYSDKNDKDFLQELCFTPDCRGLISKIVIFSSSGLVKREFEQKITKPK 688


>UniRef50_Q8CNT0 Cluster: Abortive phage resistance protein; n=1;
           Staphylococcus epidermidis ATCC 12228|Rep: Abortive
           phage resistance protein - Staphylococcus epidermidis
           (strain ATCC 12228)
          Length = 443

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = +2

Query: 53  GPTTSKCKYTTSKNS-TMLYMYISNKVTKYINKSRHIRQNFYLSIENAFTP*NFRHQLLL 229
           G    K  Y   KN+  M +++  N   KY    + +  NF   I++        H LL 
Sbjct: 140 GVIEEKLNYLLEKNTGEMFHLFSENNEVKYRFSPKLLTNNFEKDIKDKIYKYWGNHTLLS 199

Query: 230 YLPHDINFFNRGLRHYLRQ*IKKHSRSYLNNL 325
            + +++N  N  +  YL+  I K+  ++L+N+
Sbjct: 200 IINYELNQDNANI-FYLKSAINKNLINFLDNI 230


>UniRef50_Q03FC8 Cluster: Integrase; n=1; Pediococcus pentosaceus
           ATCC 25745|Rep: Integrase - Pediococcus pentosaceus
           (strain ATCC 25745 / 183-1w)
          Length = 357

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 202 IKFSTSTFTLPTSRYQLLQSRTTTLSKAINKKTLTIL 312
           IK S    TL    Y LLQSR  T+ K ++K T+T++
Sbjct: 91  IKESFDGITLENLTYSLLQSRLDTIGKTLSKGTMTLI 127


>UniRef50_Q22SU0 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 923

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 13/43 (30%), Positives = 28/43 (65%)
 Frame = +3

Query: 147 NHVTFVKIST*ALKTLLHHKIFDINFYFTYLTISTSSIADYDI 275
           N + ++ +   ALK+L+ +K+ D+N+ +  +++S S I + DI
Sbjct: 8   NVIRYIDLDKEALKSLIGNKVIDLNYKYRKISLSESFIEEKDI 50


>UniRef50_O74562 Cluster: Exocyst complex component sec8; n=1;
           Schizosaccharomyces pombe|Rep: Exocyst complex component
           sec8 - Schizosaccharomyces pombe (Fission yeast)
          Length = 1088

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +3

Query: 300 THDLISIT*LLNGVYYKKKCVC---PLRRTTGVYWI*KIKRNNTRNSSILRQHDTLQIIN 470
           + +L+SIT L + V Y     C   PLR T+  Y++    +NN  N+S L Q + L+ + 
Sbjct: 241 SEELVSITFLKDAVAYPIVSYCSPNPLRETSNPYFLRDFLKNNA-NTSTLGQSEQLRYLE 299

Query: 471 KLTRHKTND 497
           +    K +D
Sbjct: 300 EALSLKLSD 308


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,364,245
Number of Sequences: 1657284
Number of extensions: 11620689
Number of successful extensions: 28220
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28196
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)