Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0776
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    33   0.038
SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6 |Schizosac...    27   3.3  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    26   5.8  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    26   5.8  

>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 33.1 bits (72), Expect = 0.038
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +3

Query: 300 THDLISIT*LLNGVYYKKKCVC---PLRRTTGVYWI*KIKRNNTRNSSILRQHDTLQIIN 470
           + +L+SIT L + V Y     C   PLR T+  Y++    +NN  N+S L Q + L+ + 
Sbjct: 241 SEELVSITFLKDAVAYPIVSYCSPNPLRETSNPYFLRDFLKNNA-NTSTLGQSEQLRYLE 299

Query: 471 KLTRHKTND 497
           +    K +D
Sbjct: 300 EALSLKLSD 308


>SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 136

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +1

Query: 247 QLLQSRTTTLSKAINKKTLTILSQ 318
           QL+Q RT TL+ +I+  TLTILS+
Sbjct: 9   QLVQ-RTNTLNSSIDNATLTILSR 31


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 505 IC*SFVLCLVNLLIICSVSCCRNIELFLVLFRLIFYIQ 392
           +C  F   L+ +L ICS+ C   +  FLV F L   I+
Sbjct: 1   MCPLFKTYLLYILKICSIPCLAYVVNFLVCFVLFTNIK 38


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 599 ALSQVTPGCCAGSPPQSLVLIARFSHYC 516
           A + +T  C   SPP +LV+     H+C
Sbjct: 270 AATDLTLNCLKSSPPNALVIALCCHHHC 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,106
Number of Sequences: 5004
Number of extensions: 53242
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)