Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0776
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0471 - 17563245-17563488,17563564-17563655,17563941-175640...    34   0.091
09_02_0435 - 9384225-9384412,9385084-9385133,9385209-9385274,938...    31   1.1  
05_07_0344 + 29411767-29411961,29412692-29412741,29413295-294134...    30   1.5  
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199...    29   2.6  
12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311     28   6.0  
01_05_0297 - 20578031-20578080,20578162-20578236,20578317-205784...    28   6.0  

>08_02_0471 -
           17563245-17563488,17563564-17563655,17563941-17564023,
           17564418-17564499,17565234-17565461,17565553-17565654,
           17565818-17565953,17566080-17566129,17566465-17566572,
           17568702-17568911
          Length = 444

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 337 GYITKKSVCVRSDARLEFTGYKKLNETIREIVLYYDNTIH 456
           G + K     R DA + F G K + E++++ +LYYDN ++
Sbjct: 113 GALEKVFASTRFDAVVHFAGLKAVGESVQKPLLYYDNNVN 152


>09_02_0435 -
           9384225-9384412,9385084-9385133,9385209-9385274,
           9385360-9385451,9385893-9385975,9386181-9386259,
           9386888-9387115,9387196-9387297,9387719-9387854,
           9387984-9388033,9389391-9389618
          Length = 433

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 337 GYITKKSVCVRSDARLEFTGYKKLNETIREIVLYYDNTI 453
           G + K     R DA + F G K + E++++ +LYYD+ +
Sbjct: 83  GGLEKVFSSTRFDAVVHFAGLKAVGESVQKPLLYYDHNV 121


>05_07_0344 +
           29411767-29411961,29412692-29412741,29413295-29413430,
           29413931-29414032,29414153-29414380,29414460-29414544,
           29414648-29414730,29414854-29414945,29415048-29415141
          Length = 354

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 367 RSDARLEFTGYKKLNETIREIVLYYDNTI 453
           R +A + F G K + E++++ +LYYDN +
Sbjct: 82  RFEAVIHFAGLKAVGESVQKPLLYYDNNL 110


>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
            33319949-33320011,33320103-33320496,33320684-33320796,
            33320932-33321639,33321667-33323199,33323395-33323607,
            33323718-33324700,33324890-33325423,33325694-33325820,
            33326083-33326162,33327347-33327377,33327949-33328053,
            33328119-33328124,33328349-33328985,33329144-33329478,
            33330394-33331113
          Length = 2792

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 366  DTHTFFCNIPHLIIKLLR 313
            + H FFC +PHLI+  LR
Sbjct: 1511 EVHGFFCQLPHLILSKLR 1528


>12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311
          Length = 901

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 674 IMGTKIV-LACHTKCVMRLIAHVTRNALSQVTPGCCAGSPPQSLVLIARFSHYCIFI 507
           ++G K++ L C++ C+ RL+ H           GCC G   + + L+    H  I++
Sbjct: 729 VIGEKLMDLLCYSPCLQRLVIH-----------GCCIGLLSKQMTLLVNLRHLEIWV 774


>01_05_0297 -
           20578031-20578080,20578162-20578236,20578317-20578416,
           20578476-20578535,20578833-20578907,20578989-20579069,
           20579596-20579665,20579769-20579833,20580008-20580116,
           20580812-20580876,20580964-20581023,20582008-20582134,
           20582215-20582315,20583209-20583316,20583429-20583464,
           20583569-20583714,20585555-20585564
          Length = 445

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 215 HQLLLYLPHDINFFNRGLRHYLRQ*IKKHSRS 310
           + L  ++ HD+N  + GL+H L+  ++K S S
Sbjct: 235 YSLKCHISHDVNHLHEGLKHGLKSELEKASPS 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,353,761
Number of Sequences: 37544
Number of extensions: 291623
Number of successful extensions: 602
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)