Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0776
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)                       32   0.50 
SB_49559| Best HMM Match : Ion_trans_2 (HMM E-Value=0.013)             29   2.7  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                29   4.6  
SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)                  28   8.1  

>SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)
          Length = 521

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 532 VSLIIVFSYIC*SFVLCLVNLLIICSVSCCRNIELFLVLFRLI 404
           VSL I+       FVLC  +    C+V+CC    LF VL+ ++
Sbjct: 93  VSLYILRVMFVSLFVLCTCHRACSCNVACCVRAMLFFVLYCIV 135


>SB_49559| Best HMM Match : Ion_trans_2 (HMM E-Value=0.013)
          Length = 201

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 532 VSLIIVFSYIC*SFVL-CLVNLLIICSVSCCRNI 434
           V + + F Y     VL CLVNLL++CS    RN+
Sbjct: 131 VGVFLAFPYFTGFCVLACLVNLLVLCSEKGYRNV 164


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 20  GGVTYPCGLARGPTTSKCKYTTSKNSTMLYMYIS 121
           GG+T+P GLA    T    +T +K  T+ Y++++
Sbjct: 672 GGLTWPNGLAIDTETDLLYWTDAKTDTIEYIFLN 705


>SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)
          Length = 1238

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 335 WGILQKKVCVSAPTHDWSLLDIKN 406
           W I+ KK C SA + +W+L  +KN
Sbjct: 177 WAIV-KKTCNSASSREWTLQSVKN 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,077,464
Number of Sequences: 59808
Number of extensions: 388315
Number of successful extensions: 1018
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)