Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0776
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19090.1 68417.m02814 hypothetical protein contains Pfam doma...    30   1.6  
At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative / UDP...    29   2.9  
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP...    28   5.0  
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ...    28   6.6  
At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing ...    28   6.6  
At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative / UDP...    28   6.6  

>At4g19090.1 68417.m02814 hypothetical protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594
          Length = 751

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +2

Query: 80  TTSKNSTMLYMYISNKVTKYINKSRHIRQNFYLSIENAFTP 202
           +T +++ ++ +Y+     KY   +RH+   F+L + +AF P
Sbjct: 3   STEQSNQVVCIYVLRPSPKYKESTRHLVTEFFLLVTHAFLP 43


>At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082]
          Length = 350

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 373 DARLEFTGYKKLNETIREIVLYYDNTI 453
           DA + F G K + E++ + +LYY+N I
Sbjct: 80  DAVIHFAGLKAVGESVEKPLLYYNNNI 106


>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082]
          Length = 351

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 373 DARLEFTGYKKLNETIREIVLYYDNTI 453
           DA + F G K + E++ + +LYY+N +
Sbjct: 81  DAVIHFAGLKAVGESVEKPLLYYNNNL 107


>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 687

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 583 VTCDNAFRVTCAIRRITHFV*HASTILVPIIFIP 684
           +TC+ +    CA+R++  F+ H  +   P+ F P
Sbjct: 201 LTCNLSMHPVCAMRKVPFFIDHPKSHPHPLTFFP 234


>At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing
           protein contains INTERPRO:IPR000504 RNA-binding region
           RNP-1 (RNA recognition motif) domain
          Length = 538

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 65  SKCKYTTSKNSTMLYMYISNKVT-KYINKSRHIRQNFYLSIE 187
           S  ++ +S +S  +Y+  S + T KYI+ S  IRQ+F   IE
Sbjct: 16  SLSRFQSSSSSCSVYLISSARTTSKYISISHRIRQSFREVIE 57


>At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082] (Plant Sci. 142, 147-154 (1999))
          Length = 348

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 373 DARLEFTGYKKLNETIREIVLYYDNTI 453
           DA + F G K + E++ + +LYY+N +
Sbjct: 80  DAVMHFAGLKAVGESVAKPLLYYNNNL 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,617,204
Number of Sequences: 28952
Number of extensions: 255559
Number of successful extensions: 574
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)