Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0775
         (752 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    30   0.023
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   6.0  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.0  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.0  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   6.0  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   8.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 29.9 bits (64), Expect = 0.023
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 636 RNNFSIRYWSWNYRGCWHQNLPSNCSSLK 550
           R+NF   +  WNY  CW  N     SS K
Sbjct: 746 RHNFKGLHLDWNYPVCWQSNCKKGASSDK 774


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 325 RHLKDASPVLDHAICKSYPDSSKLTTSDARP 233
           RH+K A PV+  + C     S++L      P
Sbjct: 68  RHIKGAIPVVSLSTCSMLCGSTQLWPQPTGP 98


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 1   PG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 132
           PG     +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 183 PGKKNTIVYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 1   PG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 132
           PG     +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 183 PGKKNTIVYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 1   PG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 132
           PG     +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 183 PGKKNTIVYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 1   PG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 132
           PG     +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 183 PGKKNTIVYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 1   PG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 132
           PG     +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 183 PGKKNTIVYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 5/16 (31%), Positives = 9/16 (56%)
 Frame = -3

Query: 627 FSIRYWSWNYRGCWHQ 580
           +++ YW   Y   WH+
Sbjct: 117 YAVYYWRQQYEDFWHR 132


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 9   ILPVVICLSQRLSHACLS 62
           I P VI    R+SH C+S
Sbjct: 71  IRPCVISRQLRVSHGCVS 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,658
Number of Sequences: 336
Number of extensions: 3840
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)