Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0775
(752 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.062
SB_17017| Best HMM Match : TIL (HMM E-Value=4.8) 35 0.062
SB_35070| Best HMM Match : TIL (HMM E-Value=8.6) 35 0.062
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22) 32 0.57
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082) 32 0.57
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5) 31 1.3
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2) 29 3.1
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_197| Best HMM Match : LISCH7 (HMM E-Value=1.3) 28 9.4
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 28 9.4
>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/31 (77%), Positives = 24/31 (77%)
Frame = +3
Query: 3 WLILPVVICLSQRLSHACLSASRIKAIPRMA 95
WLILPVVICLSQRLSHACLS S RMA
Sbjct: 131 WLILPVVICLSQRLSHACLSISTCTVKLRMA 161
>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 49.2 bits (112), Expect = 4e-06
Identities = 24/31 (77%), Positives = 24/31 (77%)
Frame = +3
Query: 3 WLILPVVICLSQRLSHACLSASRIKAIPRMA 95
WLILPVVICLSQRLSHACLS S RMA
Sbjct: 107 WLILPVVICLSQRLSHACLSISTRTVKLRMA 137
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -2
Query: 433 DVVAVSQAPSPESNPDSPLPVTTM 362
DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -2
Query: 424 AVSQAPSPESNPDSPLPVTTM 362
AVSQAPSPESNP+SP PV TM
Sbjct: 52 AVSQAPSPESNPNSPSPVVTM 72
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 35.1 bits (77), Expect = 0.062
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -3
Query: 423 PFLRLPLRNRTLIPRYP 373
PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240
>SB_17017| Best HMM Match : TIL (HMM E-Value=4.8)
Length = 171
Score = 35.1 bits (77), Expect = 0.062
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 3 WLILPVVICLSQRLS 47
WLILPVVICLSQRLS
Sbjct: 152 WLILPVVICLSQRLS 166
>SB_35070| Best HMM Match : TIL (HMM E-Value=8.6)
Length = 147
Score = 35.1 bits (77), Expect = 0.062
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 3 WLILPVVICLSQRLS 47
WLILPVVICLSQRLS
Sbjct: 128 WLILPVVICLSQRLS 142
>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
Length = 1797
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 22 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 156
L CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491
>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
Length = 1304
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 22 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 156
L CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 866 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910
>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
Length = 203
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 657 CNYELFNRNNFSIRYWSWNYRGCWHQNLPSNCSSL 553
C + RN +RYW W R C H + SSL
Sbjct: 91 CEVTVIARNILPVRYWIWLSRKCGHNKNFNKTSSL 125
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +1
Query: 619 YTKIVAVKKLVVAFVRRAVGAPHSAVILTRLR 714
Y K+VAVKKLVV F VG P L + R
Sbjct: 81 YIKVVAVKKLVVGFRDGTVGPPQGVGNLVKHR 112
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +1
Query: 619 YTKIVAVKKLVVAFVRRAVGAPHSAVILTRLR 714
Y K+VAVKKLVV F VG P L + R
Sbjct: 21 YIKVVAVKKLVVGFRDGTVGPPQGVGNLVKHR 52
>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
Length = 111
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +1
Query: 619 YTKIVAVKKLVVAFVRRAVGAP 684
Y K+VAVKKLVV F VG P
Sbjct: 88 YIKVVAVKKLVVGFRDGTVGPP 109
>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +1
Query: 619 YTKIVAVKKLVVAFVRRAVGAP 684
Y K+VAVKKLVV F VG P
Sbjct: 44 YIKVVAVKKLVVGFRDGTVGPP 65
>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +1
Query: 619 YTKIVAVKKLVVAFVRRAVGAP 684
Y K+VAVKKLVV F VG P
Sbjct: 89 YIKVVAVKKLVVGFRDGTVGPP 110
>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +1
Query: 619 YTKIVAVKKLVVAFVRRAVGAP 684
Y K+VAVKKLVV F VG P
Sbjct: 17 YIKVVAVKKLVVGFRDGTVGPP 38
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +1
Query: 619 YTKIVAVKKLVVAFVRRAVGAP 684
Y K+VAVKKLVV F VG P
Sbjct: 34 YIKVVAVKKLVVGFRDGTVGPP 55
>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -3
Query: 573 PSN--CSSLKYLKCTHSDYEAS*ESRIVIFRHYL-PVPGVGNLRA 448
PSN CS L YL+C +R+++F H L +G RA
Sbjct: 523 PSNLRCSILSYLRCNKPPVTIRWRTRLIVFTHLLVSYRSIGGQRA 567
>SB_197| Best HMM Match : LISCH7 (HMM E-Value=1.3)
Length = 120
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 645 ARSCIC-APRCRCTAFRGDTDTFAEHIVGE 731
A C C A RCRC F FA H+VGE
Sbjct: 53 AARCRCFAARCRC--FAAHCRCFAAHVVGE 80
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 442 PSLDVVAVSQAPSPESNPDSPLP 374
P+ DV+A Q P P S D PLP
Sbjct: 75 PAEDVMAAHQEPKPTSAIDQPLP 97
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,526,802
Number of Sequences: 59808
Number of extensions: 501861
Number of successful extensions: 1354
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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