Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0775
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   8.2  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   8.2  

>AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical
           protein C45H4.13 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 642 FNRNNFSIRYWSWN-YRGCWHQNLPSNCSSLKYLK 541
           +N N +S  Y+  N YR CW Q+   + +S  Y K
Sbjct: 315 YNNNYYSGNYYCCNSYRSCWRQSYSCSGNSYYYGK 349


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 630 CCG*KARSCICAPRCRCTAFR 692
           CCG     C C PRC C   R
Sbjct: 79  CCGCGCGCCCCRPRCCCCCRR 99


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 445 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 341
           +P+  V+  ++ PS +S     + VTT  V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 80  DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 184
           D+  G++   WF +++SV WI +V+   I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,037,079
Number of Sequences: 27780
Number of extensions: 358570
Number of successful extensions: 1027
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)