Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0772
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    45   3e-06
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    27   0.98 
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    25   5.2  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    24   9.1  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    24   9.1  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    24   9.1  

>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 45.2 bits (102), Expect = 3e-06
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +2

Query: 194 VVVLGDIGRSPRMQYHALSLANNGLDVKIISY 289
           V+VLGDI RSPRMQYHA+S A  G  V ++ Y
Sbjct: 29  VLVLGDIARSPRMQYHAVSFAKLGWKVDLLGY 60


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.1 bits (57), Expect = 0.98
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 239 HALSLANNGLDVKIISYVETDPLPEVLNNPHITVIKLHPF 358
           H   L++  LD   I  +E  PLP V  N HI   +L  F
Sbjct: 359 HLPLLSDEKLDKSAIDKIEPTPLPSVHMNSHIAKGELPKF 398


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 194 VVVLGDIGRS-PRMQYHALSLANNGLDVKIISYVETDPL 307
           + +LG +G +  R+QY    LA NG+ +++ + +  D L
Sbjct: 279 IAILGKVGLALVRLQYLKSDLACNGIPIQLNTSIWLDEL 317


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 205 QYYNFSYFSHITQHHESFFKARTS 134
           Q +  S+FS I+   +SFF   TS
Sbjct: 298 QQWKLSFFSKISHSEKSFFSNATS 321


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
 Frame = -3

Query: 297 VSTYEIIFTSKPLLARDNA*YCI-----RGLLPMSPSTTTLATFLTLPNIMRASLKPELL 133
           ++TYE I   +PLL+R    Y I     R     S  T TL T+ +  +  R  L    L
Sbjct: 520 LTTYEYIIKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYS--SRYRLILTGTPL 577

Query: 132 RN---DLWYRITFVV 97
           +N   +LW  + FV+
Sbjct: 578 QNNLPELWALLNFVL 592


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 299 DPLPEVLNNPHITVIKL 349
           DPLPE  N P+  V+ L
Sbjct: 167 DPLPEPYNRPYTLVLSL 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,480,204
Number of Sequences: 5004
Number of extensions: 28084
Number of successful extensions: 52
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)