Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0772
         (377 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0570 - 4205739-4205776,4205846-4205897,4205939-4206067,420...    61   3e-10
06_03_0492 - 21386587-21386700,21387471-21387599,21387715-213877...    57   4e-09
01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416           27   3.7  
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513...    27   4.9  
07_01_0526 - 3913713-3913881,3914505-3914677                           27   6.5  
04_03_0028 + 9698427-9698849,9698862-9699227                           27   6.5  
08_02_0718 + 20382323-20385046                                         26   8.6  

>03_01_0570 -
           4205739-4205776,4205846-4205897,4205939-4206067,
           4206183-4206258,4206360-4206412,4206494-4206555,
           4206624-4206734,4206813-4206979,4207089-4207268,
           4207598-4207687,4207773-4207921,4208367-4208501,
           4208575-4208630,4208790-4208823,4209409-4209519
          Length = 480

 Score = 60.9 bits (141), Expect = 3e-10
 Identities = 32/55 (58%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
 Frame = +2

Query: 179 RKVAKVVVLGDIGRSPRMQYHALSLANN-GLDVKIISYVETDPLPEVLNNPHITV 340
           RK A VVVLGDIGRSPRMQYH+LSLAN  G++V I++   +DP   +  NP I +
Sbjct: 10  RKRAAVVVLGDIGRSPRMQYHSLSLANQAGMEVDIVANGGSDPHLLLRENPSIHI 64


>06_03_0492 -
           21386587-21386700,21387471-21387599,21387715-21387790,
           21387898-21387950,21388034-21388095,21388164-21388274,
           21388361-21388527,21388804-21388869,21389416-21389505,
           21389592-21389740,21390182-21390316,21390399-21390454,
           21390630-21390663,21391908-21392018
          Length = 450

 Score = 57.2 bits (132), Expect = 4e-09
 Identities = 30/55 (54%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
 Frame = +2

Query: 179 RKVAKVVVLGDIGRSPRMQYHALSLAN-NGLDVKIISYVETDPLPEVLNNPHITV 340
           R+ A  VVLGDIGRSPRMQYH+LSLAN  G++V I++   +DP   +  NP I +
Sbjct: 10  RRRAAAVVLGDIGRSPRMQYHSLSLANQGGMEVDIVANGGSDPHLLLRENPLIHI 64


>01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416
          Length = 1030

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = -3

Query: 324 LFRTSGSGSVSTYEIIFTSKPLLARDNA*YCIRGLLPMSPSTTTLATFLTLPNIMRASLK 145
           L+  SG G + ++  I + K L   +   Y   GL+P S    T  T LTL N   +   
Sbjct: 371 LYGGSGQGKLVSFSWIGSLKHLTYLELGNYNFSGLMPSSIINLTNLTSLTLYNCSMSGPI 430

Query: 144 PELLRN 127
           P  + N
Sbjct: 431 PSWIGN 436


>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
            5139967-5140289,5141373-5142479,5142593-5143279,
            5144214-5144522,5145488-5145823,5146165-5146263,
            5146676-5146940,5146950-5147104,5147666-5149723,
            5150168-5150367,5150662-5150718,5150965-5151079
          Length = 1985

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 195  TLATFLTLPNIMRASLKPELLRNDLWYRITF 103
            +++  +   N++   +K E L+ND WY  +F
Sbjct: 1859 SISQMVLAANLLEGMIKAEFLKNDWWYWSSF 1889


>07_01_0526 - 3913713-3913881,3914505-3914677
          Length = 113

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 220 PPYVPQYYNFSYFSHITQH 164
           PPY+PQY   SY  +  +H
Sbjct: 93  PPYIPQYNERSYHEYWREH 111


>04_03_0028 + 9698427-9698849,9698862-9699227
          Length = 262

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 277 NYFIRRDRPTP*SPKQPAYYRH 342
           NYFI+R  P P  P  P  Y++
Sbjct: 2   NYFIKRKPPAPLPPPDPIEYQY 23


>08_02_0718 + 20382323-20385046
          Length = 907

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 194 VVVLGDIGRSPRMQYHALSLANNGLDVKII 283
           +VVL DI  S    Y  L+L NNG   +II
Sbjct: 270 LVVLDDIWNSDTWDYLKLALPNNGQGSRII 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,447,255
Number of Sequences: 37544
Number of extensions: 182753
Number of successful extensions: 320
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)