Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0772
         (377 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical pr...    64   4e-11
AF003136-5|AAK21372.1|  203|Caenorhabditis elegans Hypothetical ...    26   7.8  

>U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical
           protein T26A5.4 protein.
          Length = 487

 Score = 63.7 bits (148), Expect = 4e-11
 Identities = 28/59 (47%), Positives = 41/59 (69%)
 Frame = +2

Query: 179 RKVAKVVVLGDIGRSPRMQYHALSLANNGLDVKIISYVETDPLPEVLNNPHITVIKLHP 355
           R  A VVVLGD+GRSPRM  HA  LA+ G DVK+I + ++ P  +++N+P I ++ + P
Sbjct: 12  RSEAAVVVLGDVGRSPRMCNHAKMLADEGFDVKLIGFFDSIPGEQIMNHPRIKIVGIPP 70


>AF003136-5|AAK21372.1|  203|Caenorhabditis elegans Hypothetical
           protein F28B3.4 protein.
          Length = 203

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 308 PEVLNNPHITVIKLHPFD 361
           P VLNN  + ++ LHPFD
Sbjct: 16  PAVLNNSWLFLLVLHPFD 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,082,005
Number of Sequences: 27780
Number of extensions: 157585
Number of successful extensions: 428
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)