Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0772
         (377 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16570.1 68414.m01986 glycosyl transferase family 1 protein c...    57   4e-09
At3g43710.1 68416.m04665 kelch repeat-containing F-box family pr...    27   5.5  
At5g11210.1 68418.m01310 glutamate receptor family protein (GLR2...    26   9.6  
At3g01060.3 68416.m00009 expressed protein                             26   9.6  
At3g01060.2 68416.m00007 expressed protein                             26   9.6  
At3g01060.1 68416.m00008 expressed protein                             26   9.6  

>At1g16570.1 68414.m01986 glycosyl transferase family 1 protein
           contains similarity to mannosyltransferase GI:1800223
           from Dictyostelium discoideum; contains Pfam glycosyl
           transferase, group 1 family protein domain PF00534
          Length = 465

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 30/52 (57%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
 Frame = +2

Query: 188 AKVVVLGDIGRSPRMQYHALSLANN-GLDVKIISYVETDPLPEVLNNPHITV 340
           A VVVLGD+GRSPRMQYHALSLA      V I++Y  + P   VLN+P I +
Sbjct: 7   ACVVVLGDLGRSPRMQYHALSLARQASFQVDIVAYGGSIPHEAVLNHPSIHI 58


>At3g43710.1 68416.m04665 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 378

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 122 KSFLRSSGFKEALMMLGNVRKVAKVVVLGDIGRSPRMQYHALSLAN 259
           K+ L S+G +   M  G +  +   +VL  + R PRM Y  LSL +
Sbjct: 9   KTLLMSNGEERRSMTFG-IEMLPDDLVLSCLARVPRMYYPILSLVS 53


>At5g11210.1 68418.m01310 glutamate receptor family protein (GLR2.5)
           plant glutamate receptor family, PMID:11379626
          Length = 829

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +2

Query: 176 VRKVAKVVVLGDIGRSPRMQYHALSLANNGLDVKIISYVETDPLPEVLNNPH 331
           V  + K  V+  IG    MQ   L    N   V IIS+  T PL + L +P+
Sbjct: 20  VLPLQKREVVAIIGPGTSMQAPFLINLGNQSKVPIISFSATSPLLDSLRSPY 71


>At3g01060.3 68416.m00009 expressed protein
          Length = 372

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 245 LSLANNGLDVKIISYVETDPLPEVLNNPH 331
           L+ A NGL VKI+S  +  P   V++NP+
Sbjct: 275 LASAKNGLAVKILSKGKDIPNDPVVDNPN 303


>At3g01060.2 68416.m00007 expressed protein
          Length = 442

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 245 LSLANNGLDVKIISYVETDPLPEVLNNPH 331
           L+ A NGL VKI+S  +  P   V++NP+
Sbjct: 262 LASAKNGLAVKILSKGKDIPNDPVVDNPN 290


>At3g01060.1 68416.m00008 expressed protein
          Length = 455

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 245 LSLANNGLDVKIISYVETDPLPEVLNNPH 331
           L+ A NGL VKI+S  +  P   V++NP+
Sbjct: 275 LASAKNGLAVKILSKGKDIPNDPVVDNPN 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,591,775
Number of Sequences: 28952
Number of extensions: 146315
Number of successful extensions: 304
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)