Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0771
         (820 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              30   0.022
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    26   0.36 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.8  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 30.3 bits (65), Expect = 0.022
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +2

Query: 746 EMATAAFSSFLEKSYEL 796
           EMATAA SS LEKSYEL
Sbjct: 1   EMATAASSSSLEKSYEL 17



 Score = 22.6 bits (46), Expect = 4.5
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
 Frame = +3

Query: 765 SAASSKSLTN---FPDGQVIT 818
           +AASS SL      PDGQVIT
Sbjct: 4   TAASSSSLEKSYELPDGQVIT 24


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
 Frame = +3

Query: 522 VLDSGDGV--SHTVPIYEGYALP-PRHPASGLGRS*PHRLPHEDPHRARLLVHYH 677
           VLD  D    SH   +   Y+ P P H   G G S  H  PH     A    H H
Sbjct: 390 VLDLEDNALASHNNLLNNVYSTPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 348  LRVAPEEHPVLLTEAPLNPKANREKM 425
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 643  ILTERGYSFTTTARAGNRS*HQGEAVL 723
            +L ++G    TTA   N+   QG+ V+
Sbjct: 1132 LLAQKGLKLATTASHANQLNRQGKQVI 1158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,510
Number of Sequences: 438
Number of extensions: 5970
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)