Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0770
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.0  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    21   8.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/31 (25%), Positives = 20/31 (64%)
 Frame = -1

Query: 546 SYTSEVNLSATFAY*NLITEL*IVYIVITRL 454
           ++T +VNL+    Y N+I  + +  +++T++
Sbjct: 636 TFTDKVNLTRVDMYANMIETMELTSLLLTKV 666


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 248 LYYTSSSSSCFGFLNTE 298
           LYY S SS    ++NTE
Sbjct: 264 LYYNSPSSENLYYVNTE 280


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 403 ATTNYYFLMFNVT 365
           ATTNY +L +N T
Sbjct: 357 ATTNYLYLTYNGT 369


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 107 HQRMSPNKALKYNKKRVR 54
           HQR++    L+Y  +R+R
Sbjct: 53  HQRLTKKMILEYELRRIR 70


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 248 LYYTSSSSSCFGFLNTEG--RDHLLATGVYY 334
           LYY++ SS    ++NTE   +    A  V+Y
Sbjct: 263 LYYSALSSHNLNYVNTEQFVKSQYQANNVHY 293


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 221 YIC*LFEFLLYYTSSSSSCF 280
           YIC L +  L Y  + S CF
Sbjct: 657 YICYLGKAYLMYAIAGSQCF 676


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 326 LLLRGGGHDPQY 291
           L+L   GHDP Y
Sbjct: 233 LILSANGHDPDY 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,388
Number of Sequences: 438
Number of extensions: 3886
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)