Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0770
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21700.1 68414.m02717 SWIRM domain-containing protein / DNA-b...    27   8.5  

>At1g21700.1 68414.m02717 SWIRM domain-containing protein /
           DNA-binding family protein contains similarity to
           SWI/SNF complex 170 KDa subunit [Homo sapiens]
           gi|1549241|gb|AAC50694; contains Pfam domain PF04433:
           SWIRM domain, PF00249: Myb-like DNA-binding domain
          Length = 807

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
 Frame = -1

Query: 297 SVLRKPKQEE---EEDV*YNKNSNNQQI 223
           S  RKPKQEE   EE+   N N+NN+++
Sbjct: 20  SAARKPKQEEEDMEEEDEENNNNNNEEM 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,311,188
Number of Sequences: 28952
Number of extensions: 221466
Number of successful extensions: 419
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)