Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0769
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    29   0.83 
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    27   3.4  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    26   4.4  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   7.8  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   7.8  

>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 405 PLKATSQEFKRPRIPILNRSGFELLSNLIKTNGAESASH 521
           PL   S++FKRP    ++R  FEL  +   ++G+ + +H
Sbjct: 661 PLANNSRQFKRPSYGNMSRPSFELNGSRNPSHGSLNTAH 699


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 582 SIISSFPNLLLNIPMHVH 529
           S+ISS PN+L N+P+  H
Sbjct: 391 SLISSNPNMLANLPLRKH 408


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -2

Query: 580  YNQLVPQFITKYTYACTHYRCDADSAPLVLIRFDNSSNPERFNIGMRGRLNS 425
            Y  +  + + +   A   Y+ D D   +   +FDN S PE     +R  L +
Sbjct: 858  YRLITEKSVEENILARAQYKLDIDGKVIQAGKFDNKSTPEEREAFLRSLLEN 909


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +2

Query: 158 SNKKNIVFLMNSYPLHDKC 214
           ++++ ++FL  S+PLH +C
Sbjct: 280 NSRERVIFLSCSHPLHQRC 298


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 310 NLDIVGSQAITYQIKCGA 363
           + +I GSQ + +QI+CGA
Sbjct: 539 DFEIQGSQIVGFQIRCGA 556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,793
Number of Sequences: 5004
Number of extensions: 61483
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)