Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0769
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0475 - 3669734-3671452                                           30   1.5  
06_03_1172 - 28147957-28148274,28149362-28149877                       29   2.6  
06_03_0107 + 16709543-16709640,16712555-16713408,16715051-167151...    29   2.6  

>11_01_0475 - 3669734-3671452
          Length = 572

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 201 FMTNVVTTVA-PPRAGS*YAIPPLYTVELDQYQNLTWKPRY 320
           F+ N  +  A PPR  S   +P   T + D+ ++ TW+PR+
Sbjct: 127 FVYNAGSAAADPPRPPSLSLLPAYVTTDADEEESETWRPRH 167


>06_03_1172 - 28147957-28148274,28149362-28149877
          Length = 277

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = -2

Query: 568 VPQFITKYTYACTHYRCDADSAPLVLIRFDNSSNPERFNIGMRGRLNSCDVALSGYFNKV 389
           +P ++    +   HYRC+      +   F       R ++G R     C + +SGYF +V
Sbjct: 217 LPDYLKDNEFILGHYRCEWSVCDALCSAFAWHKETLRLDVGRR---RHCYIFVSGYFQRV 273


>06_03_0107 +
           16709543-16709640,16712555-16713408,16715051-16715193,
           16715312-16715573,16715835-16716150,16716257-16716383,
           16717088-16717149,16717291-16717374,16717438-16717494,
           16717705-16717768,16718057-16718152
          Length = 720

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 142 ECELHSPPDVKWLLEPIDIHNVN 74
           E  LHSP D  W L+  DIH+ +
Sbjct: 28  ESPLHSPNDAAWRLQQFDIHHTD 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,575,545
Number of Sequences: 37544
Number of extensions: 413343
Number of successful extensions: 794
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)