Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0769
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27409| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00046)          30   2.0  
SB_45601| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)         29   4.7  

>SB_27409| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00046)
          Length = 240

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +3

Query: 312 PRYCWISSDYLSNKVRCCYVGH*CQSTLLKYPLKATSQEFKRPRIPILNRSGFELLS 482
           P Y W SS +L+ ++R       C    L YP   T     +   P L+   ++ +S
Sbjct: 91  PVYNWFSSPFLARRIRIVVQAPKCLQQRLPYPRLHTHDSISQTTYPRLHTHTYDSIS 147


>SB_45601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 14  SPRGWVQLETLELIAQGWWRIY 79
           +PRG V LE LE I QGW+  Y
Sbjct: 51  APRGSVPLERLEEIVQGWYDWY 72


>SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 62   GWWRIYVVDVYGLQ*PLNIR-WAVELTLHSTHISNKKNIVFL 184
            GW++I ++ +   Q PLNIR W  ++   S+H  ++  I  L
Sbjct: 1379 GWYKICLLSLQQEQQPLNIRSWCSQIPTSSSHSGSQVEIAEL 1420


>SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)
          Length = 882

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -2

Query: 568 VPQFITKYTYACTHYRCDADSAPLVLIRFDNSSNPERFNIGMRGRLNSCDVALSGYFNKV 389
           V  FIT++      YR D +     L  +   +   RFN   R  LN+ D AL+   N  
Sbjct: 93  VNDFITRFQRMTEFYRWDDERKLRALPLYLTGNASVRFNSHPRAALNTWDAALTQLKNHF 152

Query: 388 D 386
           D
Sbjct: 153 D 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,295,362
Number of Sequences: 59808
Number of extensions: 465218
Number of successful extensions: 839
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)