Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0769
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    32   0.33 
U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    29   3.1  

>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -2

Query: 175 YVFFVAYMSG---VECELHSPPDVKWLLEPIDIHNVNAP 68
           Y+ F+AY++    V  E  SP   KWL EPI  H+ +AP
Sbjct: 606 YIIFIAYLTYYCLVAMEFISPIQTKWLAEPI-YHDFDAP 643


>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 35  LETLELIAQGWWRIYVVDVYGLQ*PLNIRWAVELTLHSTHISNKKNIVFLMNSY 196
           + +++LI     RI+   VYG++ P+N+ W     + ST I+ K  +  +   Y
Sbjct: 216 MASVQLIISSVRRIHDAAVYGIKDPINVSWPTIAIMGST-IAVKLTLFIICQKY 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,468,684
Number of Sequences: 27780
Number of extensions: 350050
Number of successful extensions: 654
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)