Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0769
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g11090.1 68415.m01187 expressed protein                             28   5.0  
At3g55950.1 68416.m06217 protein kinase family protein contains ...    28   6.7  
At1g32160.1 68414.m03956 expressed protein                             28   6.7  
At3g18110.1 68416.m02303 pentatricopeptide (PPR) repeat-containi...    27   8.8  

>At2g11090.1 68415.m01187 expressed protein
          Length = 151

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 238 VRDLNTQYHHCTQWN*TSIKT*RGNLDIVGSQAIT 342
           V DL+T  HH T W+ T+  T R +     S  IT
Sbjct: 26  VEDLSTSRHHSTPWSSTTWTTTRSHYSTPWSSIIT 60


>At3g55950.1 68416.m06217 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; similar to
           cytokinin-regulated kinase 1 [Nicotiana tabacum]
           gi|10998537|gb|AAG25966
          Length = 814

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 221 NGGAATCGILIRNTTIVHSGTRPVSKLDVET 313
           +G   +CG+ IRN  I+  GT PV    ++T
Sbjct: 164 SGVGFSCGVSIRNNRILCWGTDPVKSNQIQT 194


>At1g32160.1 68414.m03956 expressed protein
          Length = 406

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 662 PNILVHIVSISYSPSFYCVNKNNDDKSV*SARSPIYY 552
           P+ L+ I    Y P  Y + +N D+ S    RS + Y
Sbjct: 283 PDSLIRIQPEEYDPDEYAIQRNEDESSSYGLRSYVTY 319


>At3g18110.1 68416.m02303 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 1429

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 28  GTT*DLRTYSSRLVAHLRCGC 90
           G T DL+T++S + A+ +CGC
Sbjct: 782 GRTPDLKTWNSLMSAYAQCGC 802


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,548,819
Number of Sequences: 28952
Number of extensions: 328589
Number of successful extensions: 662
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)