Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0766
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    28   1.2  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   3.8  

>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +1

Query: 253 YLKVFTFKFIGTNMYRNVV*FFNVCKEDVTSLHFFFIMLYTHFF*TFSPFLLLVKFQYTL 432
           Y+  FTF  IG ++   +   +++ K  +T   FF   L   F   F PFL  + + Y  
Sbjct: 247 YVGFFTFLSIGLSVCLELWYLWDI-KTGLTVERFFQHFLARFFCLIFFPFLFFLFWFYMH 305

Query: 433 YNIL 444
           +NIL
Sbjct: 306 FNIL 309


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
            Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 191  ESVVFLFSIILRLQNYMRSQYI*KYSHSSLSELT 292
            ES   +F+++ +  N  RSQY+   SHSSL   T
Sbjct: 994  ESSHVMFTLLTKRGNKQRSQYLEIPSHSSLVRST 1027


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,006
Number of Sequences: 5004
Number of extensions: 47042
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)