Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0766
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405... 29 3.9
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 29 3.9
01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246... 29 3.9
02_04_0367 + 22399785-22399899,22400911-22401102,22401990-224021... 28 5.1
>05_07_0260 -
28739035-28739085,28739316-28739596,28740545-28740572,
28740653-28740749,28741216-28741272,28741353-28741415,
28741533-28741621,28741779-28741865,28742041-28742162,
28742245-28742500,28742595-28742744,28743120-28743278,
28743820-28743892,28743968-28744024,28744115-28744243,
28744469-28744560,28745220-28745252
Length = 607
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/89 (24%), Positives = 43/89 (48%)
Frame = +1
Query: 208 IFHYIAASELYAIAIYLKVFTFKFIGTNMYRNVV*FFNVCKEDVTSLHFFFIMLYTHFF* 387
++HY AA+E+Y ++VF ++ + N ++ K+D + F +M +FF
Sbjct: 186 MYHYFAATEIYNA---IRVFIAAYVWMTGFGNFSYYY--IKKDFSIARFAQMMWRLNFFV 240
Query: 388 TFSPFLLLVKFQYTLYNIL*LKAVFFYIV 474
F +++ Y LY I + +F +V
Sbjct: 241 AFC--CIVLDNDYMLYYICPMHTLFTLMV 267
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 438 YIITKSSFFLYSNNSSKRLLY-YFGLKTIANC*FFIDL 548
YII K S L +NNS + +Y Y G++ NC FF+++
Sbjct: 3755 YII-KFSMTLQTNNSLEFCVYPYLGVQVPENCVFFVNI 3791
>01_05_0788 +
25223373-25223405,25224285-25224373,25224496-25224624,
25224710-25224766,25224844-25224916,25225509-25225667,
25226755-25226904,25227013-25227268,25227358-25227479,
25227531-25227599,25227653-25227739,25227842-25227930,
25228168-25228224,25229162-25229258,25229348-25229506
Length = 541
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/89 (24%), Positives = 43/89 (48%)
Frame = +1
Query: 208 IFHYIAASELYAIAIYLKVFTFKFIGTNMYRNVV*FFNVCKEDVTSLHFFFIMLYTHFF* 387
++HY AA+E+Y ++VF ++ + N ++ K+D + F +M +FF
Sbjct: 185 MYHYFAATEIYNA---IRVFIAAYVWMTGFGNFSYYY--IKKDFSLARFAQMMWRLNFFV 239
Query: 388 TFSPFLLLVKFQYTLYNIL*LKAVFFYIV 474
F +++ Y LY I + +F +V
Sbjct: 240 AFC--CIVLDNDYMLYYICPMHTLFTLMV 266
>02_04_0367 + 22399785-22399899,22400911-22401102,22401990-22402117,
22402229-22402384,22402948-22403206,22403762-22403836,
22404288-22404610,22405041-22405274,22405355-22405542,
22405734-22405869,22405963-22406071,22406988-22407090,
22407188-22407374,22407467-22407565,22407666-22407724,
22408581-22408686,22408798-22408962
Length = 877
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/92 (21%), Positives = 40/92 (43%)
Frame = +1
Query: 229 SELYAIAIYLKVFTFKFIGTNMYRNVV*FFNVCKEDVTSLHFFFIMLYTHFF*TFSPFLL 408
S+L ++ +F F GT + ++ F ++ F+M F F PF+L
Sbjct: 727 SDLRIPLLFTILFNVAFFGTGNFASIASFEISSVYRFITIFSPFLMAALLIFKLFIPFML 786
Query: 409 LVKFQYTLYNIL*LKAVFFYIVTTVLSDFYTI 504
++ + ++ + + Y + +LSD TI
Sbjct: 787 VICTFSAITKVVRIPRLGCYFLVILLSDVMTI 818
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,573,898
Number of Sequences: 37544
Number of extensions: 216654
Number of successful extensions: 290
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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