Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0764
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    34   0.008
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.38 
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   2.0  
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    25   3.5  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   3.5  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    25   6.1  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.1  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    25   6.1  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    24   8.1  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    24   8.1  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   8.1  

>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 34.3 bits (75), Expect = 0.008
 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
 Frame = +3

Query: 78  SPSMISLFCLYGYSLSIYIPVA-------IFWTIQISWLQWLFVLMAAFVSGAVLIFWLL 236
           +P ++   CLYGY+  +++PV+       +  T+    ++++   +   +S   L   L 
Sbjct: 155 NPKLLDCLCLYGYANIVWLPVSLATPPFGLLSTLASHIVKYVLTGIGLLISIVFLTRNLY 214

Query: 237 PALKK--SKYFYMLVGSILAFHFLVATGFMLYFF 332
           P  ++  S    +L+  I+ FH L+A    L FF
Sbjct: 215 PICQQAGSNLCKLLLFGIIVFHCLLALSLQLIFF 248


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 28.7 bits (61), Expect = 0.38
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = +3

Query: 105 LYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAF-VSGAVLIFWLLP---ALKKSKYFYML 272
           +Y   +  Y+P    WTI  +  +W+F ++A+F +  ++ I W+ P    L ++   Y+ 
Sbjct: 113 IYSPHIKDYLP----WTISCTKNEWVFDMLASFSIENSLRIKWVAPDKAKLNETWKCYLH 168

Query: 273 VGSILAFHFLVA 308
           +  +   +FL +
Sbjct: 169 IQDVKKSYFLAS 180


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
 Frame = +3

Query: 81  PSMISLFCLY-GYSLSIYIPVAIFWTIQIS-W--LQWL-FVL---MAAFVSGAVLIFWLL 236
           P +     LY  + +++ IP+ + W + +S W  L WL FVL   +  FV G +   +  
Sbjct: 89  PGIFVFLGLYVPFVVTLLIPIDVTWDVSLSIWRFLYWLTFVLSWIILPFVQGYMESKFST 148

Query: 237 PALKKSKYFYMLVGSILAFHFL 302
           P  + S  FY  +   L   FL
Sbjct: 149 PRSRLSDSFYKNLRYYLLLTFL 170


>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +2

Query: 206 LRSSPHILAAASFEEIKVFLYACRIYSCFSFLGGNWFYVILL----LRTKPSKRSWRA 367
           + + P +   ++   + VFL  C I     F+GG  +  ++L    LR  P+   WR+
Sbjct: 192 IHACPTVKKDSTLNPVSVFLLFCAIAFLAYFVGGFVYQRVVLNARGLRQIPNYEMWRS 249


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 293  SFLGGNWFYVILLLRTKPSKRSWRASDPVRATGAAA 400
            SFL G W  +  +LR   +K +W    PV   G  A
Sbjct: 1199 SFLVGAWLIIFYVLRKLSNKHTWMV--PVLGLGFGA 1232


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 101 EERYHRWRV*GLRLNLILSIGKRSPFQD 18
           +ER HRWR  G   N ++ I +   ++D
Sbjct: 8   DERIHRWRCLGSEGNELIYIDEEQTWKD 35


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 123 SIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFW 230
           S +IP+A+FW   + W  +  V  AA +   + + W
Sbjct: 425 SFFIPIALFW---LGWTCYPSVHWAAPMVSGIFLGW 457


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +3

Query: 105 LYGYSLSIYIPVAIFWTIQISWLQWLF 185
           L+ +   +Y  ++  W + +S+ +WLF
Sbjct: 4   LFNFWRIMYANISSIWLLVVSFFEWLF 30


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 27  WTTLPDGQDEIETQTSNSPSMISLFCLY 110
           +T +  G D         P+MISL CLY
Sbjct: 110 YTEILGGTDAFSGLVIGIPTMISLVCLY 137


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 216 VLIFWLLPALKKSKYFYMLVGSILAFHFL 302
           V+++W+   LK+   F++    +  +HFL
Sbjct: 84  VVVYWIRVFLKRIYTFFVHSARVFLYHFL 112


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 27  WTTLPDGQDEIETQTSNSPSMISLFCLY 110
           +T +  G D         P+MISL CLY
Sbjct: 110 YTEILGGTDAFSGLVIGIPTMISLVCLY 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,298
Number of Sequences: 5004
Number of extensions: 42995
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)