Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0764
(415 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0668 - 24147412-24147618,24148019-24148286,24149506-241497... 51 3e-07
05_05_0081 + 22248963-22249016,22249120-22249165,22249259-222493... 48 2e-06
02_05_0177 + 26505956-26506202,26506838-26507247,26507448-265076... 32 0.21
02_01_0396 + 2874932-2875240,2875401-2875532,2875678-2875941 30 0.64
03_05_0783 - 27662178-27662237,27662659-27662700,27662791-276628... 29 1.1
03_05_0603 - 26046145-26046273,26046400-26046459,26046820-260468... 29 1.5
07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936 29 1.9
06_02_0197 - 12912818-12913411,12913505-12913732 28 3.4
06_02_0167 + 12529281-12529597,12530358-12530475 28 3.4
08_01_0816 + 7935399-7936286,7936842-7936997,7937124-7937335,793... 27 5.9
08_02_0946 + 22880399-22880600,22881588-22881650,22881786-228817... 27 7.8
01_03_0171 - 13419944-13421362 27 7.8
>01_05_0668 -
24147412-24147618,24148019-24148286,24149506-24149728,
24149822-24149996
Length = 290
Score = 51.2 bits (117), Expect = 3e-07
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Frame = +3
Query: 30 TTLPDGQDEIETQTSNSPSMISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVS 209
T +P G I S ++ L+CLYGYSL I+IP ++ + I +W+ +A F+S
Sbjct: 185 TFVPLGLYVILKYFSAPAGLVQLWCLYGYSLFIFIPASLLSIVPIEIFRWVIAGVAGFMS 244
Query: 210 GAVLIFWLLPALKKS-KYFYMLVGSILAFHFLVATGFMLYFF 332
+ L + S + ++++V I +A LYFF
Sbjct: 245 ATFVAMNLRAHIVNSGERWFLIVAGIFLLQLGLAVLLKLYFF 286
>05_05_0081 +
22248963-22249016,22249120-22249165,22249259-22249357,
22250178-22250337,22250858-22251128,22251295-22251486
Length = 273
Score = 48.4 bits (110), Expect = 2e-06
Identities = 22/84 (26%), Positives = 44/84 (52%)
Frame = +3
Query: 81 PSMISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKY 260
PS++ +C++GYSL I+IP ++ I + +L+W+ +++ S + I L +
Sbjct: 190 PSLVRFWCMWGYSLFIFIPASVLLLIPVEFLRWVIIILVGGAS-SWFISLNLKECTEGAD 248
Query: 261 FYMLVGSILAFHFLVATGFMLYFF 332
+L+ S F +A ++FF
Sbjct: 249 MMVLIASAAVLQFTLALFIKVFFF 272
>02_05_0177 +
26505956-26506202,26506838-26507247,26507448-26507624,
26507775-26507999,26508089-26508265,26508357-26508593,
26508855-26508944,26509102-26509254
Length = 571
Score = 31.9 bits (69), Expect = 0.21
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +3
Query: 255 KYFYMLVGSILAFHFLVATGFMLYF---FYGPNPVSAPGVPVTPSGLLVLQLLI 407
++ Y + I+A VA GF L F + P S PGVP+ P + +L+
Sbjct: 465 RFSYAIAFMIIALLIAVAAGFALQFRQVYVDPPGFSCPGVPIVPMVSVFFNMLL 518
>02_01_0396 + 2874932-2875240,2875401-2875532,2875678-2875941
Length = 234
Score = 30.3 bits (65), Expect = 0.64
Identities = 27/91 (29%), Positives = 42/91 (46%)
Frame = +3
Query: 75 NSPSMISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKS 254
+SPS+++L LY L+++ P T S +F+ A+FV+GAV+ PA
Sbjct: 20 HSPSLVTL--LYSPLLNLFTPPPATTTTLYSG-DIMFINTASFVAGAVVASPEQPAKLVR 76
Query: 255 KYFYMLVGSILAFHFLVATGFMLYFFYGPNP 347
++ GS A + GF Y NP
Sbjct: 77 DQRRVVPGSCRARRGAASNGFRTYCMQTWNP 107
>03_05_0783 -
27662178-27662237,27662659-27662700,27662791-27662892,
27662991-27663147,27663230-27663307,27663391-27663446,
27663557-27663634,27663736-27663867,27663943-27664078,
27664252-27664403,27665317-27665391,27665476-27665535,
27665865-27665944,27666392-27666462,27666549-27666689,
27667467-27667555,27668657-27668731,27669303-27669401,
27669526-27669572,27669654-27669875,27671485-27671557,
27671650-27671823
Length = 732
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +3
Query: 147 FWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKYFYMLVGSILAFHFLVATGFMLY 326
FW L+WLF L+ +G IF L S + Y +I+ + V GF +Y
Sbjct: 64 FWVPYYVMLKWLFSLLIGVGTGLAAIFINLAVENFSGWKYAATFAIIQHSYFV--GFFVY 121
Query: 327 FFY 335
+
Sbjct: 122 IVF 124
>03_05_0603 -
26046145-26046273,26046400-26046459,26046820-26046895,
26046988-26047109,26047286-26047360,26047466-26047536,
26048102-26048129,26048625-26048738
Length = 224
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 180 LFVLMAAFVSGAVLIFWLLPALKKSKYFYMLVGSILAFHFLVATGFMLYFFY 335
L V + F++ +IFWL P+L +Y S++A + + +G ++ Y
Sbjct: 70 LGVSVGYFIADLAMIFWLYPSLGGMEYIVHHTLSLVAIAYTMLSGEGQFYTY 121
>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
Length = 838
Score = 28.7 bits (61), Expect = 1.9
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 12 WGVLKWTTLPDGQDEIETQTSNSPSMISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVL 191
WG L W +P + T+T+ +S L+ + ++ F ++ S ++F
Sbjct: 397 WGPLGWL-IPSETFPLATRTTGFSFAVSSNMLFTFLIA-----QAFLSMMCSMKAFIFFF 450
Query: 192 MAAF-VSGAVLIFWLLPALK 248
A + V A +FWLLP K
Sbjct: 451 FAIWIVIMAAFVFWLLPETK 470
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 94 LSSVYMAIRFPFTSLWLYSGPFRSLGSS 177
LS +AI P WLYSG + +LG S
Sbjct: 4 LSDEALAIVVPIVVYWLYSGLYMALGHS 31
>06_02_0167 + 12529281-12529597,12530358-12530475
Length = 144
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 171 LQWLFVLMAAFVSGAVLIFWLLPALKKSKY 260
L W +LMA V A+ +W +P + ++Y
Sbjct: 78 LAWRIILMAGAVPAALTYYWRMPMPETARY 107
>08_01_0816 +
7935399-7936286,7936842-7936997,7937124-7937335,
7937473-7937665
Length = 482
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +3
Query: 63 TQTSNSPSMISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAV 218
T +++P++ +L GYS+ IP I W + + +L + + F+ GAV
Sbjct: 191 TSFAHNPAVTNLNADDGYSIKGSIPKTILWMVILLFL--MGFIAGGFILGAV 240
>08_02_0946 +
22880399-22880600,22881588-22881650,22881786-22881790,
22882143-22882253,22882339-22882443,22882529-22882609,
22883236-22883247,22883680-22883733,22884476-22884586,
22884789-22884935
Length = 296
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 173 PVVVCVDGCLCLRSSPHILAAASFEEIKVFLYA 271
P++ D CL L +PH + E K F YA
Sbjct: 231 PIIWNYDHCLRLYPTPHTIVLGDKSEQKAFKYA 263
>01_03_0171 - 13419944-13421362
Length = 472
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 126 IYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLI 224
+ + A+ + + WL W F+ AA V G L+
Sbjct: 234 VLVIAAVLCVVALVWLAWPFLFPAAAVIGLALV 266
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,165,769
Number of Sequences: 37544
Number of extensions: 287673
Number of successful extensions: 780
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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