Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0764
(415 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45746| Best HMM Match : FA_desaturase (HMM E-Value=0) 33 0.070
SB_56974| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.87
SB_7463| Best HMM Match : Ank (HMM E-Value=0) 29 1.5
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 28 2.6
SB_58550| Best HMM Match : DUF1065 (HMM E-Value=0.15) 27 4.6
SB_19882| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_25673| Best HMM Match : MFS_1 (HMM E-Value=0.18) 27 4.6
SB_24445| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_38111| Best HMM Match : Kelch_1 (HMM E-Value=0) 27 8.1
SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_33742| Best HMM Match : Kelch_1 (HMM E-Value=0) 27 8.1
>SB_45746| Best HMM Match : FA_desaturase (HMM E-Value=0)
Length = 331
Score = 33.5 bits (73), Expect = 0.070
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 171 LQWLFVLMAAFVSGAVLIFWLLPALKKSKYFYMLVGSILAFHFLVATGFMLYFFYGP 341
LQ+ F M GA + +L+ A + + G ++ H++ GF Y +YGP
Sbjct: 192 LQFSFDAMLVHFFGARFLVYLIAASLLGMGLHPVAGHFISEHYMFTEGFETYSYYGP 248
>SB_56974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 785
Score = 29.9 bits (64), Expect = 0.87
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 92 ISLLFIWLFAFHLHPCGYILDHSDLLAPV 178
+++++IWL + P GY DHS+ +AP+
Sbjct: 492 LAIIWIWLVSVSARPTGY-RDHSECVAPI 519
>SB_7463| Best HMM Match : Ank (HMM E-Value=0)
Length = 864
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 173 PVVVCVDGCLCLRSSPHILAAASFEEIKVFLYACRIYSCFSFLGGNWFYVILLL 334
P+ V ++ L P + A+ E +++L A + S GG W+ +LLL
Sbjct: 454 PLFVAINPNLIREKVP--IVEATIEAPRLYLIARHSFITLSIFGGTWYVTVLLL 505
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = -3
Query: 230 PEYEDCSGDKGSHQHKQPLEPRDLNGPEYSHRDVNG 123
P+ ++ + + H+ K+P +P++ G + S R +NG
Sbjct: 677 PDPQEPTSNDNEHEKKEPEKPKEQGGRKKSRRVLNG 712
>SB_58550| Best HMM Match : DUF1065 (HMM E-Value=0.15)
Length = 624
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 138 VAIFWTIQISWLQWLFVL--MAAFVSGAVLIFWLLPALKKSKY 260
V W +++W W F+L + A + + ++ LP L + +Y
Sbjct: 147 VTEIWYGELNWADWKFILLFLVALIFPPLWVYLSLPVLNRYQY 189
>SB_19882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 279 SILAFHFLVATGFMLYFFYGPN 344
+I F FL+ TGF+ Y F PN
Sbjct: 32 AIGVFLFLLVTGFLCYMFLAPN 53
>SB_25673| Best HMM Match : MFS_1 (HMM E-Value=0.18)
Length = 634
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 203 KGSHQHKQPLEPRDLNGPEYSHRDVNGKRIA 111
+G H P P DL+GP Y H + GKR A
Sbjct: 59 RGKRTHNAP--PLDLSGPAYFH--IRGKRTA 85
>SB_24445| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 27.5 bits (58), Expect = 4.6
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +3
Query: 90 ISLFCLYGY-SLSIYIP-VAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKYF 263
+++ CL Y S+ I + +A+ I +++ QW +A FV + WL+ K+++
Sbjct: 67 LTVICLQYYPSVMIILQHLAVLCFILVAFTQWFPGKIAYFVGMSFACLWLVSV--KTQFR 124
Query: 264 YMLVGSILAFHFLVAT 311
+++ I+A L+A+
Sbjct: 125 WLINNVIIAMFSLLAS 140
>SB_38111| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 548
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 124 PFTSLWLYSGPFRSLGSSGCL 186
PFT W YS P + SS C+
Sbjct: 422 PFTDTWHYSAPMATCRSSPCV 442
>SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 189 LMAAFVSGAVLIFWLLPALKKSKYFYMLVGSI 284
L+AA +SG V+ +W LP + K F GS+
Sbjct: 121 LVAANMSGDVVYYWKLPPVFLEKKFVSYGGSL 152
>SB_33742| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 570
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 124 PFTSLWLYSGPFRSLGSSGCL 186
PFT W YS P + SS C+
Sbjct: 422 PFTDTWHYSAPMATCRSSPCV 442
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,652,601
Number of Sequences: 59808
Number of extensions: 309351
Number of successful extensions: 918
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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