Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0764
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical ...    74   4e-14
AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical ...    74   4e-14
AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical ...    74   4e-14
Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical pr...    29   1.0  
U23510-2|AAC46787.1|  250|Caenorhabditis elegans Hypothetical pr...    29   1.0  
U23510-1|AAN60495.1|  245|Caenorhabditis elegans Hypothetical pr...    29   1.0  
AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical ...    24   1.3  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AL032632-11|CAJ80824.1|  462|Caenorhabditis elegans Hypothetical...    27   4.1  
AL032632-10|CAA21581.1|  475|Caenorhabditis elegans Hypothetical...    27   4.1  
AF000298-4|AAC48261.4|  226|Caenorhabditis elegans Hypothetical ...    27   5.4  
Z82073-5|CAB63322.1|  333|Caenorhabditis elegans Hypothetical pr...    26   9.4  
Z78064-5|CAB01511.1|  473|Caenorhabditis elegans Hypothetical pr...    26   9.4  
Z71259-3|CAE17785.1|  235|Caenorhabditis elegans Hypothetical pr...    26   9.4  
Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical pr...    26   9.4  
AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine re...    26   9.4  

>AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7b protein.
          Length = 287

 Score = 74.1 bits (174), Expect = 4e-14
 Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
 Frame = +3

Query: 90  ISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKYFYM 269
           + L CLYGYSL+I+IPV++ W + I W +W  +  +  +SG VL   + PA++      +
Sbjct: 190 VDLVCLYGYSLAIFIPVSVLWIVDIGWFRWALIFASVGLSGTVLARAIWPAVQNDNNKMI 249

Query: 270 LVG---SILAFHFLVATGFMLYFF 332
             G   S++  HFL+A  F +YFF
Sbjct: 250 AFGTVISVVVLHFLLAFTFKVYFF 273


>AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7a protein.
          Length = 277

 Score = 74.1 bits (174), Expect = 4e-14
 Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
 Frame = +3

Query: 90  ISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKYFYM 269
           + L CLYGYSL+I+IPV++ W + I W +W  +  +  +SG VL   + PA++      +
Sbjct: 180 VDLVCLYGYSLAIFIPVSVLWIVDIGWFRWALIFASVGLSGTVLARAIWPAVQNDNNKMI 239

Query: 270 LVG---SILAFHFLVATGFMLYFF 332
             G   S++  HFL+A  F +YFF
Sbjct: 240 AFGTVISVVVLHFLLAFTFKVYFF 263


>AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7c protein.
          Length = 414

 Score = 74.1 bits (174), Expect = 4e-14
 Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
 Frame = +3

Query: 90  ISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKYFYM 269
           + L CLYGYSL+I+IPV++ W + I W +W  +  +  +SG VL   + PA++      +
Sbjct: 180 VDLVCLYGYSLAIFIPVSVLWIVDIGWFRWALIFASVGLSGTVLARAIWPAVQNDNNKMI 239

Query: 270 LVG---SILAFHFLVATGFMLYFF 332
             G   S++  HFL+A  F +YFF
Sbjct: 240 AFGTVISVVVLHFLLAFTFKVYFF 263


>Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical
           protein M01B2.3 protein.
          Length = 284

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +3

Query: 138 VAIFWTIQISWLQWLFVLMAAFVSGAV--LIFWLLPALKKSKYFYMLVGSILAFHFLVAT 311
           V + +T+ ++ L + ++L++   +  +  L FWL+ A         L+  +++F  ++AT
Sbjct: 51  VDVVYTLNLTTLMFYYLLISLSANFIIKNLTFWLVWASTSIGSMRSLLALLISFERVLAT 110

Query: 312 GFMLYF 329
            F +YF
Sbjct: 111 YFPIYF 116


>U23510-2|AAC46787.1|  250|Caenorhabditis elegans Hypothetical
           protein R12C12.9a protein.
          Length = 250

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 177 WLFVLMAAFVSGAVLIFWLLPALKKSKY 260
           WL +L  A++SG +L+F  LP   K  +
Sbjct: 205 WLDILFIAYISGHILVFLSLPFFNKKLF 232


>U23510-1|AAN60495.1|  245|Caenorhabditis elegans Hypothetical
           protein R12C12.9b protein.
          Length = 245

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 177 WLFVLMAAFVSGAVLIFWLLPALKKSKY 260
           WL +L  A++SG +L+F  LP   K  +
Sbjct: 200 WLDILFIAYISGHILVFLSLPFFNKKLF 227


>AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical
           protein Y105C5B.8 protein.
          Length = 447

 Score = 24.2 bits (50), Expect(2) = 1.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 95  SLLFIWLFAFHLHPCGYILDHSDLLAPVVVCV 190
           SL +I L  +HL     + D  DLL P+ +C+
Sbjct: 72  SLSYISLGTYHLLS-RLVFDGCDLLVPIDICI 102



 Score = 23.4 bits (48), Expect(2) = 1.3
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 275 RIYSCFSFLGGNWFYVILLLRTKPSK-RSWRASD 373
           RI+  FS +    FY+ ++L T  +K + WR+++
Sbjct: 105 RIFQSFSSIFFQLFYIAVVLNTFMAKFQFWRSNE 138


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = +3

Query: 165 SWLQWLFVLMAAFVSGAVLIFWLLPALKKSKY 260
           +W +W++++ A  + G+V++FWL    +KS +
Sbjct: 461 NW-RWIWLVFAVLLIGSVILFWLTFQFEKSDW 491


>AL032632-11|CAJ80824.1|  462|Caenorhabditis elegans Hypothetical
           protein Y11D7A.3b protein.
          Length = 462

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
 Frame = +3

Query: 93  SLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLM----AAFVSGAVLIFWLL-PALKK-- 251
           +LF   GYSL  +I  ++  +I       +        AAF   A  +F L+ P+L+   
Sbjct: 28  TLFLYTGYSLQQFIGESVIHSIHEKSPDTISAYAGYYGAAFHLSAFAVFSLITPSLQHFV 87

Query: 252 -SKYFYMLVGSILAFHFLVATGFMLYFFY 335
            SK+F  L  ++ A ++L       Y+FY
Sbjct: 88  PSKWFLTLASALFAVYYLGFFQLNKYYFY 116


>AL032632-10|CAA21581.1|  475|Caenorhabditis elegans Hypothetical
           protein Y11D7A.3a protein.
          Length = 475

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
 Frame = +3

Query: 93  SLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLM----AAFVSGAVLIFWLL-PALKK-- 251
           +LF   GYSL  +I  ++  +I       +        AAF   A  +F L+ P+L+   
Sbjct: 41  TLFLYTGYSLQQFIGESVIHSIHEKSPDTISAYAGYYGAAFHLSAFAVFSLITPSLQHFV 100

Query: 252 -SKYFYMLVGSILAFHFLVATGFMLYFFY 335
            SK+F  L  ++ A ++L       Y+FY
Sbjct: 101 PSKWFLTLASALFAVYYLGFFQLNKYYFY 129


>AF000298-4|AAC48261.4|  226|Caenorhabditis elegans Hypothetical
           protein W03D2.6 protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 259 IFICLSDLFLLFISWWQLVLCY 324
           I +C+   ++LF+++W LVLC+
Sbjct: 72  IEVCIQ--YILFLAYWSLVLCF 91


>Z82073-5|CAB63322.1|  333|Caenorhabditis elegans Hypothetical
           protein W06D12.7 protein.
          Length = 333

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 75  NSPSMISLFCLYGYSLSIYIPVAIFWTIQIS-WLQWLFVLMAAFVS 209
           ++ S + LFC   +++   +     W    S WL W FVLM  F+S
Sbjct: 105 STSSCLLLFCNSVFNIFNMLRNNKSWLRTFSEWLAWTFVLMFPFMS 150


>Z78064-5|CAB01511.1|  473|Caenorhabditis elegans Hypothetical
           protein F57B1.2 protein.
          Length = 473

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 125 HLHPCGYILDHSDLLAPVVVCVDGCLCLRSSPHILAAASFEE 250
           H+   G + +H+  L  VV C D C C +  P ++A   ++E
Sbjct: 352 HVRWSGIVPNHAPKLYDVVACTDSC-CTKWQP-LVANCEYKE 391


>Z71259-3|CAE17785.1|  235|Caenorhabditis elegans Hypothetical
           protein F13G3.12 protein.
          Length = 235

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 198 AFVSGAVLIFWLLPAL 245
           AFVSG+  ++WL+PA+
Sbjct: 187 AFVSGSESLYWLVPAI 202


>Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical
           protein T23G5.1 protein.
          Length = 788

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +1

Query: 37  FPMDKMR---LRRRPQTLHL*YLSSVYMAIRFPFTS 135
           +P+++ R   +R RP  L +  L+  +M +R+PFTS
Sbjct: 492 YPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTS 527


>AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 66 protein.
          Length = 286

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 19/70 (27%), Positives = 36/70 (51%)
 Frame = +3

Query: 63  TQTSNSPSMISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPA 242
           T T NS S+  LF +   S++ Y+  +IF++ +I+W     ++   F    V  F+    
Sbjct: 5   TITCNSLSI--LFPIITCSINCYLIYSIFYSKRITWKSEFSLIYTRFAIDIVYTFF---- 58

Query: 243 LKKSKYFYML 272
           +  +K +Y+L
Sbjct: 59  VPHNKIYYVL 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,871,449
Number of Sequences: 27780
Number of extensions: 239759
Number of successful extensions: 846
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)