Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0764
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   0.59 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   1.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   1.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   2.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   3.2  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   5.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   5.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   5.5  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    21   7.3  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   7.3  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   7.3  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    21   7.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    20   9.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   9.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   9.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.6  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.2 bits (50), Expect = 0.59
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 239 WQQPEYEDCSGDKGSHQ 189
           W   +YEDCSG   +H+
Sbjct: 115 WSFAKYEDCSGIVSAHK 131


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 284 NRSDKHIKIL*FLQSWQQPEYEDCSG 207
           N+  K   +L     W   +YEDCSG
Sbjct: 101 NKKGKGGPLLRPYPDWSFAKYEDCSG 126


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 126 IYIPVAIFWTIQISWL--QWLFVLMAAF-VSGAVLIFWLLPALKKSKYFYML 272
           + +P+ I W I +SW     +  +MA F + G  L  ++L  +   +Y+ ++
Sbjct: 90  LMMPLEIGWAITVSWKAGDVMCRIMAFFRMFGLYLSSFVLVCISMDRYYAVI 141


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 220 SYSGCCQL*RNQSIFICLSDLFLLFISWWQLVLCYTSF 333
           S+ GCC   R           FLLFI   Q+ +   +F
Sbjct: 66  SFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAF 103


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -3

Query: 374 GHWHARSAYWVWSVKEV*HK-TSCHQEMKSKNRSDKHIK 261
           G+ H    + V    E  +K T CH+   SK   + HIK
Sbjct: 242 GYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIK 280



 Score = 21.0 bits (42), Expect = 5.5
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 84  MESLRSASQSHLVHREA*SISRHPTV 7
           M S    SQSHL+  E       PTV
Sbjct: 339 MYSREQYSQSHLISNENRDFQTTPTV 364


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 239 WQQPEYEDCSG 207
           W   +Y+DCSG
Sbjct: 110 WSFAKYDDCSG 120


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 239 WQQPEYEDCSG 207
           W   +Y+DCSG
Sbjct: 110 WSFAKYDDCSG 120


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 239 WQQPEYEDCSG 207
           W   +Y+DCSG
Sbjct: 110 WSFAKYDDCSG 120


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 15  GVLKWTTLPDGQDEIET 65
           GV+ W  +P+G +   T
Sbjct: 66  GVVNWNKIPEGANTTST 82


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 15  GVLKWTTLPDGQDEIET 65
           GV+ W  +P+G +   T
Sbjct: 114 GVVNWNKIPEGANTTST 130


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 15  GVLKWTTLPDGQDEIET 65
           GV+ W  +P+G +   T
Sbjct: 114 GVVNWNKIPEGANTTST 130


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 15  GVLKWTTLPDGQDEIET 65
           GV+ W  +P+G +   T
Sbjct: 114 GVVNWNKIPEGANTTST 130


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 239 WQQPEYEDCSG 207
           W    Y+DCSG
Sbjct: 114 WSWANYKDCSG 124


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 239 WQQPEYEDCSG 207
           W    Y+DCSG
Sbjct: 114 WSWANYKDCSG 124


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 123 KANSHINRREIS*MESLRSASQSHLVHR 40
           K   HIN   I  ++S +S +  HL+++
Sbjct: 3   KEKIHINIVVIGHVDSGKSTTTGHLIYK 30


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 259 IFICLSDLFLLFISWWQLV 315
           ++IC S +    I WW+ V
Sbjct: 170 VWICSSAISFPAIVWWRAV 188


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 123 KANSHINRREIS*MESLRSASQSHLVHR 40
           K   HIN   I  ++S +S +  HL+++
Sbjct: 3   KEKIHINIVVIGHVDSGKSTTTGHLIYK 30


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 122 FHLHPCGYILDHS 160
           FHL P G +L HS
Sbjct: 185 FHLLPTGELLVHS 197


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 233 QPEYEDCSGDKGSHQHKQPLEPRDLNGPEYSH 138
           Q EYE  S +       QP E  D++  ++ H
Sbjct: 346 QNEYEQPSEEDLKRITNQPSEGEDISDYKFRH 377


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 122 FHLHPCGYILDHS 160
           FHL P G +L HS
Sbjct: 185 FHLLPTGELLVHS 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,378
Number of Sequences: 438
Number of extensions: 3035
Number of successful extensions: 21
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)