Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0764
(415 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27490.1 68418.m03286 integral membrane Yip1 family protein c... 48 2e-06
At3g05280.1 68416.m00576 integral membrane Yip1 family protein c... 48 3e-06
At2g39805.1 68415.m04889 integral membrane Yip1 family protein c... 44 3e-05
At2g29900.1 68415.m03631 presenilin family protein similar to pr... 30 0.54
At5g09410.1 68418.m01090 calmodulin-binding protein similar to a... 30 0.71
At3g55110.1 68416.m06120 ABC transporter family protein ATP-bind... 29 1.6
At5g64220.1 68418.m08067 calmodulin-binding protein similar to a... 28 2.9
At3g52310.1 68416.m05749 ABC transporter family protein contains... 27 3.8
At1g35880.1 68414.m04457 hypothetical protein 27 3.8
At3g20070.2 68416.m02539 expressed protein 27 5.0
At3g20070.1 68416.m02538 expressed protein 27 5.0
At3g14130.1 68416.m01787 (S)-2-hydroxy-acid oxidase, peroxisomal... 27 5.0
At5g62040.1 68418.m07787 brother of FT and TFL1 protein (BFT) id... 27 6.6
At3g59140.1 68416.m06593 ABC transporter family protein putative... 27 6.6
At3g29810.1 68416.m03794 phytochelatin synthetase family protein... 27 6.6
At3g14150.1 68416.m01789 (S)-2-hydroxy-acid oxidase, peroxisomal... 27 6.6
At1g12110.1 68414.m01402 nitrate/chlorate transporter (NRT1.1) (... 27 6.6
At5g64910.1 68418.m08165 expressed protein ; expression support... 26 8.7
At4g19645.2 68417.m02886 expressed protein 26 8.7
At4g19645.1 68417.m02885 expressed protein 26 8.7
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 26 8.7
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 26 8.7
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha... 26 8.7
At1g66640.1 68414.m07572 expressed protein 26 8.7
At1g31820.1 68414.m03908 amino acid permease family protein weak... 26 8.7
>At5g27490.1 68418.m03286 integral membrane Yip1 family protein
contains Pfam domain, PF04893: Yip1 domain
Length = 282
Score = 48.4 bits (110), Expect = 2e-06
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Frame = +3
Query: 75 NSPS-MISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKK 251
++PS ++ LFCLYGYSL ++IP + + +W+ +A F+S + L +
Sbjct: 191 SAPSGLVQLFCLYGYSLFVFIPALCLSVVPLEIFRWVIAGLAGFMSATFVALNLKAHINS 250
Query: 252 S-KYFYMLVGSILAFHFLVATGFMLYFF 332
+ + ++++V SI ++ LY F
Sbjct: 251 AGERWFLIVVSIFLLQLALSVVLKLYLF 278
>At3g05280.1 68416.m00576 integral membrane Yip1 family protein
contains Pfam domain, PF04893: Yip1 domain
Length = 281
Score = 47.6 bits (108), Expect = 3e-06
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Frame = +3
Query: 75 NSPS-MISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKK 251
++PS ++ LFCLYGYSL ++IP + + +W+ +A F+S + L +
Sbjct: 190 SAPSGLVQLFCLYGYSLFVFIPALCLSVVPVEIFRWVIAGVAGFMSATFVALNLKAHINS 249
Query: 252 S-KYFYMLVGSILAFHFLVATGFMLYFF 332
+ + +++ SI +A LY F
Sbjct: 250 AGERSILIIASIFLLQLALAVVLKLYIF 277
>At2g39805.1 68415.m04889 integral membrane Yip1 family protein
contains Pfam domain, PF04893: Yip1 domain
Length = 275
Score = 44.4 bits (100), Expect = 3e-05
Identities = 18/82 (21%), Positives = 44/82 (53%)
Frame = +3
Query: 87 MISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKYFY 266
++ +CL+GYSL I++P ++ I + +L+W+ +L+A S + L L+ +
Sbjct: 193 LLRFWCLWGYSLFIFVPTSLPLLIPVEFLRWVIILLAGSASSCFVALNLRSYLETNNDIT 252
Query: 267 MLVGSILAFHFLVATGFMLYFF 332
+++ + +++ ++FF
Sbjct: 253 VVMAAAFGLQMVLSIFIKVWFF 274
>At2g29900.1 68415.m03631 presenilin family protein similar to
presenilin [Drosophila melanogaster] GI:2062395;
contains Pfam profile PF01080: Presenilin
Length = 397
Score = 30.3 bits (65), Expect = 0.54
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 84 SMISLFCLYGYSLSIYIPVAIFWTIQISWLQW-LFVLMAAFVSGAVLI 224
S S+ GY + I + VA F+T+ W W L V +A + AVL+
Sbjct: 157 SKFSILITQGYLVWIGVLVAYFFTLLPEWTTWVLLVALALYDIAAVLL 204
>At5g09410.1 68418.m01090 calmodulin-binding protein similar to
anther ethylene-upregulated calmodulin-binding protein
ER1 GI:11612392 from [Nicotiana tabacum]
Length = 1007
Score = 29.9 bits (64), Expect = 0.71
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +2
Query: 173 PVVVCVDGCLCLRSSPHILAAASFEEIKVFLYACRIYSCFSFLGGN 310
P + VDG LC + PH F +AC F FL G+
Sbjct: 457 PAEILVDGVLCCHAPPHTAGHVPFYVTCSNRFACSEVREFDFLSGS 502
>At3g55110.1 68416.m06120 ABC transporter family protein ATP-binding
cassette-sub-family G-member 2, Mus musculus,
EMBL:AF140218
Length = 708
Score = 28.7 bits (61), Expect = 1.6
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +3
Query: 117 SLSIYIPVAIFWTIQIS-----WLQWLFVLMAAFVSGAVLIFWLLPALKKSKYFYMLVGS 281
+LSI FWT+ +S + + ++ AAF SG+ ++ ++ + YM+ +
Sbjct: 510 ALSIAFAATTFWTVGLSGGLESFFYYCLIIYAAFWSGSSIVTFISGLIPNVMMSYMVTIA 569
Query: 282 ILAFHFLVATGFML 323
L++ L+ GF +
Sbjct: 570 YLSYCLLLG-GFYI 582
>At5g64220.1 68418.m08067 calmodulin-binding protein similar to
anther ethylene-upregulated calmodulin-binding protein
ER1 GI:11612392 from[Nicotiana tabacum]
Length = 1050
Score = 27.9 bits (59), Expect = 2.9
Identities = 21/95 (22%), Positives = 41/95 (43%)
Frame = +2
Query: 26 MDYASRWTR*D*DADLKLSIYDISLLFIWLFAFHLHPCGYILDHSDLLAPVVVCVDGCLC 205
+D+ +WT+ D +++++ + LL + C + ++ P + VDG LC
Sbjct: 463 IDFWPKWTQTD--SEVEVMVIGTFLLSPQEVTSYSWSCMF----GEVEVPADILVDGVLC 516
Query: 206 LRSSPHILAAASFEEIKVFLYACRIYSCFSFLGGN 310
+ PH + F ++C F FL G+
Sbjct: 517 CHAPPHEVGRVPFYITCSDRFSCSEVREFDFLPGS 551
>At3g52310.1 68416.m05749 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter
Length = 737
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 212 SGDKGSHQHKQPLEPRDLNGPEYSHRDVN 126
+GD SH KQ + R L+ P YS N
Sbjct: 31 NGDGSSHGSKQHVRARTLSSPSYSSNSKN 59
>At1g35880.1 68414.m04457 hypothetical protein
Length = 222
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 116 IAI*TEERYHRWRV*GLRLNLILSIG 39
+AI EE H W GL N++LS+G
Sbjct: 196 VAIANEEHSHDWDSYGLPANIVLSLG 221
>At3g20070.2 68416.m02539 expressed protein
Length = 282
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 317 KTSCHQEMKSKNRSDKHIKIL*FLQSWQQPEYEDCSGDK 201
K +E+K+K+ S++ +K+ +Q YED SG K
Sbjct: 82 KLLMEEELKNKSLSEEVVKLKELVQEEHPRNYEDQSGKK 120
>At3g20070.1 68416.m02538 expressed protein
Length = 282
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 317 KTSCHQEMKSKNRSDKHIKIL*FLQSWQQPEYEDCSGDK 201
K +E+K+K+ S++ +K+ +Q YED SG K
Sbjct: 82 KLLMEEELKNKSLSEEVVKLKELVQEEHPRNYEDQSGKK 120
>At3g14130.1 68416.m01787 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative similar to Chain A,
Glycolate Oxidase (E.C.1.1.3.15) Mutant With Tyr 24
Replaced By Phe (Y24f) gi|999542
Length = 363
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = -1
Query: 172 SQEI*MVQNIATGM*MESE*PYKQKRDIIDGEFEVCVSISSCPS 41
+Q + + + I G+ + E K+ D++ EFE+ +++S CP+
Sbjct: 300 AQAVLIGRPIVYGLAAKGEDGVKKVIDMLKNEFEITMALSGCPT 343
>At5g62040.1 68418.m07787 brother of FT and TFL1 protein (BFT)
identical to SP|Q9FIT4 BROTHER of FT and TFL1 protein
{Arabidopsis thaliana}; contains Pfam profile PF01161:
Phosphatidylethanolamine-binding protein
Length = 177
Score = 26.6 bits (56), Expect = 6.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 256 FDFFKAGSSQNMRTAPETKAAINTN 182
F FK Q ++ APET+ NTN
Sbjct: 122 FALFKQRGRQAVKAAPETRECFNTN 146
>At3g59140.1 68416.m06593 ABC transporter family protein putative
multi resistance protein mrp - Arabidopsis thaliana,
EMBL:ATMRPPROT
Length = 1453
Score = 26.6 bits (56), Expect = 6.6
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 135 PVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKYFYMLVGSILA 290
P+ ++ I I WLF+ + V G + L L +FY LV S L+
Sbjct: 86 PLILWLVILIQGFTWLFINLIICVRGTRIRKSSLRLLSIFSFFYGLVSSCLS 137
>At3g29810.1 68416.m03794 phytochelatin synthetase family protein /
COBRA cell expansion protein COBL2 similar to
phytochelatin synthetase [Hordeum vulgare subsp.
vulgare] GI:29570314; identified in Roudier, et al,
Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
Pfam profile PF04833: Phytochelatin synthetase-like
conserved region
Length = 441
Score = 26.6 bits (56), Expect = 6.6
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 395 QHQ*P*RGHWHARSAY-WVWSVK 330
QH P R HWH +++Y W VK
Sbjct: 281 QHMCPIRVHWHVKTSYKEYWRVK 303
>At3g14150.1 68416.m01789 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative similar to
(S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate
oxidase, GOX) (Short chain alpha-hydroxy acid oxidase)
[Spinacia oleracea] SWISS-PROT:P05414
Length = 363
Score = 26.6 bits (56), Expect = 6.6
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = -1
Query: 172 SQEI*MVQNIATGM*MESE*PYKQKRDIIDGEFEVCVSISSCPS 41
+Q + + + I G+ + E K+ D++ EFE+ +++S CP+
Sbjct: 300 AQAVLIGRPIIYGLAAKGEDGVKKVIDMLKNEFEITMALSGCPT 343
>At1g12110.1 68414.m01402 nitrate/chlorate transporter (NRT1.1)
(CHL1) identical to nitrate/chlorate transporter
SP:Q05085 from [Arabidopsis thaliana]; contains Pfam
profile: PF00854 POT family
Length = 590
Score = 26.6 bits (56), Expect = 6.6
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 228 WLLPALKKSKY--FYMLVGSILAFHFLVATGFMLYFFYGPNPVSAPGV 365
W+ L K + FY LV ++A +FL+ F ++ Y ++ G+
Sbjct: 531 WIADDLNKGRLYNFYWLVAVLVALNFLIFLVFSKWYVYKEKRLAEVGI 578
>At5g64910.1 68418.m08165 expressed protein ; expression supported
by MPSS
Length = 487
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 131 HPCGYILDHSDLLAPVVVCVD 193
H Y ++ D+L PVVVC+D
Sbjct: 240 HSVTYKDENKDVLVPVVVCID 260
>At4g19645.2 68417.m02886 expressed protein
Length = 268
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +3
Query: 180 LFVLMAAFVSGAVLIFWLLPALKKSKYF--YMLVGSILAF 293
L V + F++ +IFWL P+L S+Y + L G+ +A+
Sbjct: 114 LGVSVGYFLADLGMIFWLYPSLGGSEYILHHCLSGTAVAY 153
>At4g19645.1 68417.m02885 expressed protein
Length = 268
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +3
Query: 180 LFVLMAAFVSGAVLIFWLLPALKKSKYF--YMLVGSILAF 293
L V + F++ +IFWL P+L S+Y + L G+ +A+
Sbjct: 114 LGVSVGYFLADLGMIFWLYPSLGGSEYILHHCLSGTAVAY 153
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 242 SWQQPEYEDCSGDKGSHQHKQPLEPRDLNGPEYSHRDVNG 123
S ++PE + SGD S KQ + D + + +H + G
Sbjct: 849 STEEPENTNVSGDNDSTLDKQETKESDNDNNKSNHESIEG 888
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 242 SWQQPEYEDCSGDKGSHQHKQPLEPRDLNGPEYSHRDVNG 123
S ++PE + SGD S KQ + D + + +H + G
Sbjct: 849 STEEPENTNVSGDNDSTLDKQETKESDNDNNKSNHESIEG 888
>At2g17930.1 68415.m02076 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF02259 FAT domain, PF00454
Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
domain
Length = 3795
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 248 EIKVFL-YACRIYSCFSFLGGNWFYVILLLRTKP 346
E++ FL + C+IYS F F ++F + + KP
Sbjct: 135 EVQPFLDFVCKIYSIFRFTVSHFFDNVKMEEVKP 168
>At1g66640.1 68414.m07572 expressed protein
Length = 416
Score = 26.2 bits (55), Expect = 8.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 143 YILDHSDLLAPVVVCVDGC 199
Y +++S +L V +C+DGC
Sbjct: 372 YFIENSPILKKVTLCLDGC 390
>At1g31820.1 68414.m03908 amino acid permease family protein weak
similarity to asc-type amino acid transporter 2 [Mus
musculus] GI:18148438; contains Pfam profile PF00324:
Amino acid permease
Length = 482
Score = 26.2 bits (55), Expect = 8.7
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = +3
Query: 111 GYSLSIYIPVAIFWTIQISWLQWL 182
G+ + + + FW Q+ W++WL
Sbjct: 99 GFVVWVSSALGTFWGFQVGWMKWL 122
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,412,021
Number of Sequences: 28952
Number of extensions: 227536
Number of successful extensions: 681
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -