Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0763
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67350.1 68414.m07666 expressed protein contains similarity t...    29   2.5  
At2g44590.3 68415.m05551 dynamin-like protein D (DL1D) identical...    29   4.3  
At2g44590.2 68415.m05550 dynamin-like protein D (DL1D) identical...    29   4.3  
At2g44590.1 68415.m05549 dynamin-like protein D (DL1D) identical...    29   4.3  
At4g33510.1 68417.m04759 2-dehydro-3-deoxyphosphoheptonate aldol...    28   7.6  
At4g04890.1 68417.m00712 homeobox-leucine zipper protein protode...    27   10.0 

>At1g67350.1 68414.m07666 expressed protein contains similarity to
           MHC class II antigen GI:9502037 from [Aotus nancymaae]
          Length = 131

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 583 YQFRLFLRKVVAFCFLIFLSRLHSW 657
           + F+LF  + V FCF +FL  L +W
Sbjct: 85  FVFKLFFSEFVRFCFYLFLRCLGAW 109


>At2g44590.3 68415.m05551 dynamin-like protein D (DL1D) identical to
           dynamin-like protein D [Arabidopsis thaliana]
           GI:19569770; contains Pfam profiles PF01031: Dynamin
           central region, PF00350: Dynamin family, PF02212:
           Dynamin GTPase effector domain
          Length = 612

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 418 SLITYMKMMKVKFIKSSMIVSGHKQTRQTKLTFYN*FYSNIPQ 546
           ++  Y+KM+    + +      H Q RQ KL+  N FY+ I Q
Sbjct: 526 NVAAYIKMVAETLVNTIPKAVVHCQVRQAKLSLLNYFYAQISQ 568


>At2g44590.2 68415.m05550 dynamin-like protein D (DL1D) identical to
           dynamin-like protein D [Arabidopsis thaliana]
           GI:19569770; contains Pfam profiles PF01031: Dynamin
           central region, PF00350: Dynamin family, PF02212:
           Dynamin GTPase effector domain
          Length = 595

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 418 SLITYMKMMKVKFIKSSMIVSGHKQTRQTKLTFYN*FYSNIPQ 546
           ++  Y+KM+    + +      H Q RQ KL+  N FY+ I Q
Sbjct: 509 NVAAYIKMVAETLVNTIPKAVVHCQVRQAKLSLLNYFYAQISQ 551


>At2g44590.1 68415.m05549 dynamin-like protein D (DL1D) identical to
           dynamin-like protein D [Arabidopsis thaliana]
           GI:19569770; contains Pfam profiles PF01031: Dynamin
           central region, PF00350: Dynamin family, PF02212:
           Dynamin GTPase effector domain
          Length = 596

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 418 SLITYMKMMKVKFIKSSMIVSGHKQTRQTKLTFYN*FYSNIPQ 546
           ++  Y+KM+    + +      H Q RQ KL+  N FY+ I Q
Sbjct: 509 NVAAYIKMVAETLVNTIPKAVVHCQVRQAKLSLLNYFYAQISQ 551


>At4g33510.1 68417.m04759 2-dehydro-3-deoxyphosphoheptonate aldolase
           2 / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
           2 / DAHP synthetase 2 (DHS2) nearly identical to
           SP|Q00218
          Length = 507

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 86  VATTTELWSNNKCLSLP 136
           + TTTE W++++CL LP
Sbjct: 271 IMTTTEFWTSHECLLLP 287


>At4g04890.1 68417.m00712 homeobox-leucine zipper protein
           protodermal factor 2 (PDF2) identical to GP|14276060|
           protodermal factor2 (GI:14276060)
          Length = 743

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 532 SNIPQIVWFIDS*SPYQYQFRLFLRKVVAFCFLIFLSRLHSWST 663
           SNIP  +  I S    +   +L  R V++FC  +  S  H+W+T
Sbjct: 480 SNIPGDLSVITSPEGRKSMLKLAERMVMSFCSGVGASTAHAWTT 523


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,134,804
Number of Sequences: 28952
Number of extensions: 267440
Number of successful extensions: 609
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)