Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0762
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   3.6  
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    25   6.3  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   8.3  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.3  

>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 102 RRRRWTESSCQRGAPSNFIATNPDVHWPRTKSSQVQ*VMSPTS 230
           RRRRW  S  Q  A  + I +  +    RT     Q   SP+S
Sbjct: 338 RRRRWRRSRSQESASRSTIRSTDEREPERTSEDPPQLPPSPSS 380


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 9   WSFLHQNISHMRCNCFRYVCQFNHEQAPVSERRRRWTESSCQRGA 143
           WS + +N+     N  + V +F H    +SE+  R  +   Q+GA
Sbjct: 384 WSVIRKNMHTYADNFLKAVAEFQHPNGSMSEQFSR--DDGHQKGA 426


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 404 YPIEYVISSFTTHVIKELQSV 342
           YP+  ++ +F+ HV++EL S+
Sbjct: 14  YPLPEIVETFSHHVLQELVSL 34


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +3

Query: 60   YVCQFNHEQAPVSERRR--RWTESSCQRGAPSNFIATN 167
            Y    + EQ   SE++R   W +  C RG+P    A N
Sbjct: 1066 YKYDVHSEQYDSSEKKRVPAWCDRICYRGSPDYISAEN 1103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,019
Number of Sequences: 5004
Number of extensions: 37753
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)